Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:694378-697012[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.5e-05 0.00024 20.9 0.5 1 23 206 229 206 229 0.91

2 15 2.4e-05 0.00039 20.2 0.1 1 23 234 257 234 257 0.92

3 15 1e-05 0.00017 21.4 2.1 1 23 262 285 262 286 0.92

4 15 8.7e-06 0.00014 21.6 1.8 1 23 290 313 290 313 0.96

5 15 1.6e-06 2.6e-05 23.9 0.1 1 23 318 341 318 341 0.95

6 15 6.8e-05 0.0011 18.8 0.2 3 23 348 369 347 369 0.95

7 15 3.7e-07 6e-06 25.9 0.6 1 23 374 397 374 397 0.95

8 15 0.033 0.54 10.3 1.9 1 23 402 425 402 425 0.96

9 15 0.00094 0.015 15.2 4.0 1 23 430 453 430 453 0.95

10 15 1.6e-06 2.7e-05 23.9 0.2 3 23 460 481 459 481 0.95

11 15 0.00018 0.0029 17.5 4.2 1 23 486 509 486 509 0.96

12 15 8e-06 0.00013 21.7 1.4 1 23 514 537 514 537 0.94

13 15 3.8e-05 0.00062 19.6 0.4 1 23 542 565 542 565 0.93

14 15 9.6e-06 0.00016 21.5 0.6 1 23 570 593 570 593 0.97

15 15 7.8e-07 1.3e-05 24.9 1.1 1 23 598 621 598 621 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.5e-05	0.00024	20.9	0.5	1	23	206	229	206	229	0.91
2	15	2.4e-05	0.00039	20.2	0.1	1	23	234	257	234	257	0.92
3	15	1e-05	0.00017	21.4	2.1	1	23	262	285	262	286	0.92
4	15	8.7e-06	0.00014	21.6	1.8	1	23	290	313	290	313	0.96
5	15	1.6e-06	2.6e-05	23.9	0.1	1	23	318	341	318	341	0.95
6	15	6.8e-05	0.0011	18.8	0.2	3	23	348	369	347	369	0.95
7	15	3.7e-07	6e-06	25.9	0.6	1	23	374	397	374	397	0.95
8	15	0.033	0.54	10.3	1.9	1	23	402	425	402	425	0.96
9	15	0.00094	0.015	15.2	4.0	1	23	430	453	430	453	0.95
10	15	1.6e-06	2.7e-05	23.9	0.2	3	23	460	481	459	481	0.95
11	15	0.00018	0.0029	17.5	4.2	1	23	486	509	486	509	0.96
12	15	8e-06	0.00013	21.7	1.4	1	23	514	537	514	537	0.94
13	15	3.8e-05	0.00062	19.6	0.4	1	23	542	565	542	565	0.93
14	15	9.6e-06	0.00016	21.5	0.6	1	23	570	593	570	593	0.97
15	15	7.8e-07	1.3e-05	24.9	1.1	1	23	598	621	598	621	0.94

Sequence Information

Coding Sequence: ATGAACTTCCAAACAAATAAGATGGAATCGAGCGGAATGTTTAACTGTGtagtcagagTAAAAAGTGAACCTATTGATGTGTCATATGCTGAGAATGAGTATAATAGTATTGACGAGACCctcgatgataaaaattttgaattttccagATGTCCACAAGAAAACCCAATTCACGTGCTTCGGAAATCTGACGAAAGTCACAAAGGTGAACTTGACGAGTTGGCGATCGAGTTGGAATGTAAAGAACAGAAGCCCAAATTTGATTTACTAGCGGTTACGAAGATTGAAAATTCGTTTCAAAATCACTCGCAGCATATGGAAGATGGAAATGGTCATCGAGTTCGAggtgaaattaaaatagaaaattcgGGAGCTATAAAAAAGGAATCATTCGTGGACGACGCAAGCCAATTGAATGTTGAATTAGACCGTGGACTCGGTGAGCCAAATGAAACAAGCCGTGTTACAAACAAGTTGAGCGATAAACGTAGCCTCAAAACGCGCATCGGAACGGCGCACAATGGTTTCACCGACACTCGTGATCTTTGTAAAAAGACTTGGGGAACTAAGAGTAAtcgaaaaaaacatattgatGCGGTACAAAATACGATCCCTCACGCATGTAGTATTTGCGGAAACAAATTCGCACGAAAGAGTAAtctgaaaaatcatattgaCGCAGTGCATAATGGAGTCAgatatgcatgtgatatttgcggaaacaAATTCGCACGAAAGAGTACtctgaaaaatcatattgaCGCAGTGCATAATGGAGTCAgatatgcatgtgatatttgcggaaagaaatacTCTCAGAAGGATCATCTAAAAGAACACATCGATTTTGCGCATCATAAAATCGTACATGAATGTGATCgttgtggaaagaaattttcagtCAAGAATAATCTAAAAAGACACGTCGATACCGCGCACAATGGCCTTAGAtacgcatgtgatatttgcggaaagaagtACTCACAGAAGAGTGGTCTCAAGAATCACATAGATGTAGCGCACAATGGTATCGCCCCTATTTGTAAGACATGTGGTAAGACATTTGCACGACTGGCTGTTCTCAAAcgccacatcgattcggtacatgataaaatcattcatgaatgtgatatttgcggaaagaaatacTCACAGAAGGGTGATCTCAAGAGACACATGGATGTggcgcacaatggtgtcaGATATGAATGTAATAGTTGCACAAAGAAATACTTGCATAAGAGTGTTCTCAAGAATCACATGGATGTGGCGCACAATGGTATCAGACATGAATGTAGTAGCTGCACAAAGAAATACTCGCATAAGAATgatctcaagaaacacatcgatgtggcgcacaatggtgttagaaatgcatgtgatatttgcgaaaagaGTTTCTCAGATAAGAGTTatctcaagaaacacatcgaTGTGGCGCACAATGGTGTCGCTCATACTTGTGATCTTTGTGGCAAGAAATTTTCAGAGAAATGTAGTCTTAAAAACCACATCGAGTCGCTACATATTGGTATgacacatgcatgtgatacaTGCCAAAAGGTATTCTCATACAAAGGTAATCTCAAGAAGCACATTGATTCTGTGCACAAGCGAGTCAGACATGCATGTGATCTTTGTGGGAAGACATTTTCACTGAGGGGGACtctcaagaaacacatcgTTGTGGCGCACAATggtaataaatatacatgcgATGTATGTGGATCAAAATCCACAACGAAGAGTAATCTCCGAAGACACATTGACACAGTACATAATAAGATCACTCATGCATGCGATACATgcggaaaatcattttcactcAAGAGTAATCTCAAGAGGCACATCGATATGGCGCATCGCATGTGA
Protein Sequence: MNFQTNKMESSGMFNCVVRVKSEPIDVSYAENEYNSIDETLDDKNFEFSRCPQENPIHVLRKSDESHKGELDELAIELECKEQKPKFDLLAVTKIENSFQNHSQHMEDGNGHRVRGEIKIENSGAIKKESFVDDASQLNVELDRGLGEPNETSRVTNKLSDKRSLKTRIGTAHNGFTDTRDLCKKTWGTKSNRKKHIDAVQNTIPHACSICGNKFARKSNLKNHIDAVHNGVRYACDICGNKFARKSTLKNHIDAVHNGVRYACDICGKKYSQKDHLKEHIDFAHHKIVHECDRCGKKFSVKNNLKRHVDTAHNGLRYACDICGKKYSQKSGLKNHIDVAHNGIAPICKTCGKTFARLAVLKRHIDSVHDKIIHECDICGKKYSQKGDLKRHMDVAHNGVRYECNSCTKKYLHKSVLKNHMDVAHNGIRHECSSCTKKYSHKNDLKKHIDVAHNGVRNACDICEKSFSDKSYLKKHIDVAHNGVAHTCDLCGKKFSEKCSLKNHIESLHIGMTHACDTCQKVFSYKGNLKKHIDSVHKRVRHACDLCGKTFSLRGTLKKHIVVAHNGNKYTCDVCGSKSTTKSNLRRHIDTVHNKITHACDTCGKSFSLKSNLKRHIDMAHRM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484874;
90% Identity: iTF_01484874;
80% Identity: iTF_01484874;