Tpre003780.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1799487-1801688[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.09 1.5 9.0 0.2 5 23 178 197 177 197 0.90 2 17 1.7e-06 2.8e-05 23.8 0.7 1 23 202 225 202 225 0.92 3 17 4.7e-06 7.6e-05 22.5 0.1 1 23 230 253 230 253 0.96 4 17 7.9e-06 0.00013 21.7 0.2 1 23 258 281 258 281 0.95 5 17 2.4e-06 3.9e-05 23.4 1.5 1 23 286 309 286 309 0.97 6 17 1.3e-05 0.00022 21.0 1.7 1 23 314 337 314 337 0.95 7 17 0.00017 0.0028 17.5 0.2 1 23 342 365 342 365 0.92 8 17 0.00097 0.016 15.1 0.2 1 23 370 393 370 393 0.91 9 17 0.00011 0.0017 18.2 5.5 1 23 398 421 398 421 0.95 10 17 0.00027 0.0045 16.9 0.2 3 21 428 446 427 449 0.90 11 17 1.3e-06 2.2e-05 24.1 1.3 1 23 454 477 454 477 0.96 12 17 1.6e-05 0.00026 20.8 2.3 1 23 482 505 482 505 0.93 13 17 0.00087 0.014 15.3 0.2 1 23 510 533 510 533 0.92 14 17 2.8e-05 0.00046 20.0 5.5 1 23 538 561 538 561 0.95 15 17 0.0003 0.0049 16.8 1.2 1 21 566 586 566 589 0.89 16 17 1.2e-05 0.0002 21.1 0.4 1 23 594 617 594 617 0.93 17 17 0.00019 0.003 17.4 0.8 2 23 623 645 623 646 0.93
Sequence Information
- Coding Sequence
- ATGAAACAAATATGGAATCCAGTGATACACTTGATCGtgatagtgaaagatGAACCTACTGATATGTCGCTTATCGAGAATGATTGGGACGTAACTGATGAGAAACCAGATCTCAAAAATTTCCAACTCTTGCCATTACTTGAACAAAATTCAACCCACACCTTTCGAAAATGtgacaaaaattatgaaagcGATCTTGatgacaaaatgaaaatagtttttgaatgtCAAGATGTGAAGCccaatattaatttattaaaagttaaaaaatctgagaatgattttcaaaatcacttGCGGAATGTCAAAGATATCGATGGTAATACAACTCAAGacaacattaaaataaaacccGAGGGTGAAGTTAAACAAGAATTTGTTGATAATGTAGTAGGAGAATCGAATTTGAAGTTCGACCGTAAATCTGTTGAACAgaataaaaagagaagaattacaaaaaaactcaacgaagatcataacctcaaaaaacacatcgatccGGCTCATCGTGATACCTCGCCCACTTTTGGTGTATGCGAAAACAAGAGCTCAACAAAtagtaatctcaaaaaacatatcgACTCGATGCACAGTGGTATCAAACATGAGTGTGATGTATGcggcaagaaattttcattcaaaagtaATCTTAAAGTCCACATTGATGCcgtgcataatggtatcaagtatccatgtgatatttgcgaaaagaaGTACTCACAGAAGGGTgatctcaagaaacacatcgaTATCGCGCACAATGGTCTAAGATATTCatgcgatatttgcggaaaaaagTACGCAGGTAAGAGTGATCTCAAGAGACACACCGATGTggcgcacaatggtgtcacacATACTTGTGatgtatgtaaaaagaaattctccACCAGCGGTAATctaaaaattcacatcgatacGGTGCATGATAAAATCGTacatgaatgtgatatttgcagcaagacattttcacaaaaacgTTATCTCCAAATCCACATAGATTCGATGCACAATGGTACACGACAcgtatgtgatatttgtggaaaagATTACAACAGCAGGGGTTATcttaaaatccacatcgatgcaATGCACAAGGgtgtcacacatgcatgcgaAGTATGTGAATCGAAATTCACCGTTAAGAGTAATCTCCAAGCTCACATCGATGCGGTTCATAATGGTATCAGTCATGCGTGTTATGTGTGCAAAAAGACGTTTAAACATAAGAATAATCTGACTAGGCACGTTCAATCAGAGCATAATCGTATCAGACATGGatgtgatatatgcggcaagacatttgCACAAACGGATAGTCTCAAAACCCATTTCGATGCAGTGCACAACGGTGTCACTCATGAATGTGATGTATGCGGAAAGAAGTTCTCAGATAAAAGTAATGCCAAAAGGCACATTGATACGATGCACAATGGGgccacacatgcatgtgatacgTGCGGAAAGACGTTCAAACAAAAGtttaatctcaaaatccacaccGATTCGGTACACAAAGGTATCACGTATGCATGTGACACGTGTGAATCGAAATTCACGACTAAGTATAGTCTCCAAGTTCACATCGATGCGGTTCATAATGGTATCAGTCATGCGTGTTATGTGTGCAAAAAGACGTTTAAACATAAGAGGAATCTTACTAGGCACATTCAATCAGCGCATAATTGTGCCAGACATTCATGTGATAcatgcggcaagacatttgCATACACAGGTAATCTGAAAACCCATTTCGATGCAGTGCACAACGGTGTCACTCATGAATGTGATTTATGTGGAAagatattttcacaaaaaggtTACCTCAAAATCCATATCACTGCTATCCATAATGGTATGATGAATTCGtgcgatatatgcggaaagaaatatGTACAGAAGGGTAAACTTAAAGCCCACGTTGATTCGATGCATCACTCACTCATTTCAACTCGATAA
- Protein Sequence
- MKQIWNPVIHLIVIVKDEPTDMSLIENDWDVTDEKPDLKNFQLLPLLEQNSTHTFRKCDKNYESDLDDKMKIVFECQDVKPNINLLKVKKSENDFQNHLRNVKDIDGNTTQDNIKIKPEGEVKQEFVDNVVGESNLKFDRKSVEQNKKRRITKKLNEDHNLKKHIDPAHRDTSPTFGVCENKSSTNSNLKKHIDSMHSGIKHECDVCGKKFSFKSNLKVHIDAVHNGIKYPCDICEKKYSQKGDLKKHIDIAHNGLRYSCDICGKKYAGKSDLKRHTDVAHNGVTHTCDVCKKKFSTSGNLKIHIDTVHDKIVHECDICSKTFSQKRYLQIHIDSMHNGTRHVCDICGKDYNSRGYLKIHIDAMHKGVTHACEVCESKFTVKSNLQAHIDAVHNGISHACYVCKKTFKHKNNLTRHVQSEHNRIRHGCDICGKTFAQTDSLKTHFDAVHNGVTHECDVCGKKFSDKSNAKRHIDTMHNGATHACDTCGKTFKQKFNLKIHTDSVHKGITYACDTCESKFTTKYSLQVHIDAVHNGISHACYVCKKTFKHKRNLTRHIQSAHNCARHSCDTCGKTFAYTGNLKTHFDAVHNGVTHECDLCGKIFSQKGYLKIHITAIHNGMMNSCDICGKKYVQKGKLKAHVDSMHHSLISTR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484898;
- 90% Identity
- iTF_01484898;
- 80% Identity
- iTF_01484898;