Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:776614-778997[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.8e-06 6.3e-05 22.7 2.8 1 23 171 194 171 194 0.91

2 15 5.4e-05 0.00087 19.1 4.1 1 23 199 222 199 222 0.95

3 15 8.1e-06 0.00013 21.7 1.1 1 23 227 250 227 250 0.96

4 15 2.1e-06 3.4e-05 23.5 2.6 2 23 256 278 256 278 0.96

5 15 7.2e-05 0.0012 18.7 3.5 1 23 283 306 283 306 0.96

6 15 5.3e-06 8.6e-05 22.3 1.2 1 23 311 334 311 334 0.91

7 15 3.3e-07 5.3e-06 26.1 0.9 1 23 339 362 339 362 0.96

8 15 6.1e-07 1e-05 25.2 0.4 1 23 367 390 367 390 0.95

9 15 2.1e-06 3.4e-05 23.5 2.6 2 23 396 418 396 418 0.96

10 15 8.8e-05 0.0014 18.4 3.1 1 23 423 446 423 446 0.96

11 15 0.00014 0.0023 17.8 6.2 1 23 451 474 451 474 0.95

12 15 0.00016 0.0027 17.6 3.6 1 23 479 502 479 502 0.91

13 15 5.9e-07 9.6e-06 25.3 0.5 1 23 507 530 507 530 0.96

14 15 2.7e-06 4.5e-05 23.2 0.8 1 23 535 558 535 558 0.96

15 15 7.9e-06 0.00013 21.7 1.2 2 23 564 586 564 586 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.8e-06	6.3e-05	22.7	2.8	1	23	171	194	171	194	0.91
2	15	5.4e-05	0.00087	19.1	4.1	1	23	199	222	199	222	0.95
3	15	8.1e-06	0.00013	21.7	1.1	1	23	227	250	227	250	0.96
4	15	2.1e-06	3.4e-05	23.5	2.6	2	23	256	278	256	278	0.96
5	15	7.2e-05	0.0012	18.7	3.5	1	23	283	306	283	306	0.96
6	15	5.3e-06	8.6e-05	22.3	1.2	1	23	311	334	311	334	0.91
7	15	3.3e-07	5.3e-06	26.1	0.9	1	23	339	362	339	362	0.96
8	15	6.1e-07	1e-05	25.2	0.4	1	23	367	390	367	390	0.95
9	15	2.1e-06	3.4e-05	23.5	2.6	2	23	396	418	396	418	0.96
10	15	8.8e-05	0.0014	18.4	3.1	1	23	423	446	423	446	0.96
11	15	0.00014	0.0023	17.8	6.2	1	23	451	474	451	474	0.95
12	15	0.00016	0.0027	17.6	3.6	1	23	479	502	479	502	0.91
13	15	5.9e-07	9.6e-06	25.3	0.5	1	23	507	530	507	530	0.96
14	15	2.7e-06	4.5e-05	23.2	0.8	1	23	535	558	535	558	0.96
15	15	7.9e-06	0.00013	21.7	1.2	2	23	564	586	564	586	0.97

Sequence Information

Coding Sequence: atgGAATCCAGTGATTTACTCAATTGTGCCATTAGagtgaaacAGGAGGTTAGTCATGTCTCGCttgttgaaaatgataatgaaatgATTGACGAGAAGCCCGATCTTAGTAACTTTCAACTGTTATCATTTTCAccagaaaattcaAACCATACGCTTCAAAAATGTGAAGAAAATCAAGGAAGTAAACTTGATAATGAAGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCCAACTTTGATTTATTAGCAGTGAAGAAAATTGACGATTATTCTCCAAATCACTTGGGGAATGTAATTGATAGCGATGATAAAACTctaaacattattaaaatagaaCCCCCTGgggaagtgaaaaaagaaattgtttgTAGCATTGCTGAAGAATCGAATTTGAGACTTGAGTGTGAACTCATTggacgagataaaaaaaacagaaatacaaaaaaggcTGACGATCAATATAAACTCAAAGCACAGATTGAGACGATGCATAGCAATAGCATCCACGCGTGTAAAGTTTGTGGAAAAACATTTAAACGAAAGGATCATCTCAAATACCACATTGAtgcggtgcataatggtatcgCACATACGTGTGAtatatgcgagaaaaaattcacaagtAAATGTAATCTTAAGGCCCACGTGAATAACGTGCACAATCGTATCAGATATGAATGCGATGTATGTgcaaagacattttcacataaatattaTCTCAAAGCACACATCGATTCAGTTCATAATAAATTTGCACCAAAATGCGATATATGTCACAAGACATTCACATCAAAGGGTAATCTCCGAAACCACATCACATCTGTGCATGATAAAATCACTCATAGATGTGACACTTGCGGAAAAAAGTTCATGTATAAGAGCAGTcttaaaatccacatcgatcgGTTTCATAATGGTATCACCCATATGTGTGACACATGCGGAAAAAAGTTCAAGAGTAAGGGCAATCTTAAAATCCACATTGATGCGATGCACAATGATGTCGCATATACGTGTGAtatatgcgagaaaaaattcacaactAAAAGTAATCTTAAGGTCCACGTGAATAACGTGCACAATCGTATCAGATATGCATGCGATGTATGTACAAagacattttcaaataatagtgatctcaaaaaacacatcgattcaaTTCATCGTAAACTCGCACCAAAATGTGATATATGTCACAAGACATTCACATCAAAGGGTAATCTCCGAAACCACATCACATCTGTGCATGATAAAATCACTCATAGATGTGACACTTGCGGAAAAAACTTCATGTATAAGAGCAGTcttaaaatccacatcgatcgGTTTCATAATGGTATCACCCATGTATGTGACACTTGcggaaaaaagttcaagtatAAGACCAGTCTTAAAAACCACAtcaatcattttcataatggTATCACCCATATGTGTGACACATGCGGAAAAAAGTGCAAATATAAGAGCAATCTTAAAATCCACATTGATGCGATGCACAATGATGTCGCATATacgtgtgatatttgcgagaaaaaattcacaactAAAGGTAATCTTAAGGCCCACGTGAATAACGTGCACAATCCTATCAGATATGAATGCGATGTATGTACaaagacattttcatttaaaagtggtcttaaaaaacacatcgattcaaTTCATCGTAAACTCGCACCAAAATGTGATATATGTCACAAGTCATTCGCAACAAATGCTACCCTCAAAGTTCACATCTATACGTTGCATAAAGGTATCATCCATAATTGA
Protein Sequence: MESSDLLNCAIRVKQEVSHVSLVENDNEMIDEKPDLSNFQLLSFSPENSNHTLQKCEENQGSKLDNEVEIVVECEDVKPNFDLLAVKKIDDYSPNHLGNVIDSDDKTLNIIKIEPPGEVKKEIVCSIAEESNLRLECELIGRDKKNRNTKKADDQYKLKAQIETMHSNSIHACKVCGKTFKRKDHLKYHIDAVHNGIAHTCDICEKKFTSKCNLKAHVNNVHNRIRYECDVCAKTFSHKYYLKAHIDSVHNKFAPKCDICHKTFTSKGNLRNHITSVHDKITHRCDTCGKKFMYKSSLKIHIDRFHNGITHMCDTCGKKFKSKGNLKIHIDAMHNDVAYTCDICEKKFTTKSNLKVHVNNVHNRIRYACDVCTKTFSNNSDLKKHIDSIHRKLAPKCDICHKTFTSKGNLRNHITSVHDKITHRCDTCGKNFMYKSSLKIHIDRFHNGITHVCDTCGKKFKYKTSLKNHINHFHNGITHMCDTCGKKCKYKSNLKIHIDAMHNDVAYTCDICEKKFTTKGNLKAHVNNVHNPIRYECDVCTKTFSFKSGLKKHIDSIHRKLAPKCDICHKSFATNATLKVHIYTLHKGIIHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484919;
90% Identity: iTF_01484919;
80% Identity: iTF_01484919;