Tpre003709.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:776614-778997[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.045 3.3 7.3 2.1 17 43 171 194 160 195 0.81 2 15 0.046 3.4 7.2 2.9 18 44 200 223 196 223 0.91 3 15 1.5 1.1e+02 2.4 0.6 18 43 228 250 224 251 0.83 4 15 0.00094 0.07 12.7 3.6 14 43 252 278 239 279 0.79 5 15 0.18 13 5.4 2.0 18 44 284 307 280 307 0.93 6 15 0.44 33 4.1 1.6 19 43 313 334 311 335 0.88 7 15 0.0027 0.2 11.2 0.2 18 44 340 363 336 363 0.92 8 15 0.19 14 5.2 0.2 19 44 369 391 366 391 0.89 9 15 0.00065 0.049 13.2 3.6 3 43 382 418 380 419 0.82 10 15 0.16 12 5.5 1.9 18 44 424 447 420 447 0.93 11 15 0.01 0.75 9.4 4.2 18 44 452 475 450 475 0.92 12 15 1.3 96 2.6 5.3 19 44 481 503 479 503 0.94 13 15 0.0089 0.66 9.5 0.2 18 44 508 531 504 531 0.89 14 15 0.023 1.7 8.2 0.2 18 44 536 559 534 559 0.92 15 15 0.41 30 4.2 0.7 18 43 564 586 560 587 0.84
Sequence Information
- Coding Sequence
- atgGAATCCAGTGATTTACTCAATTGTGCCATTAGagtgaaacAGGAGGTTAGTCATGTCTCGCttgttgaaaatgataatgaaatgATTGACGAGAAGCCCGATCTTAGTAACTTTCAACTGTTATCATTTTCAccagaaaattcaAACCATACGCTTCAAAAATGTGAAGAAAATCAAGGAAGTAAACTTGATAATGAAGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCCAACTTTGATTTATTAGCAGTGAAGAAAATTGACGATTATTCTCCAAATCACTTGGGGAATGTAATTGATAGCGATGATAAAACTctaaacattattaaaatagaaCCCCCTGgggaagtgaaaaaagaaattgtttgTAGCATTGCTGAAGAATCGAATTTGAGACTTGAGTGTGAACTCATTggacgagataaaaaaaacagaaatacaaaaaaggcTGACGATCAATATAAACTCAAAGCACAGATTGAGACGATGCATAGCAATAGCATCCACGCGTGTAAAGTTTGTGGAAAAACATTTAAACGAAAGGATCATCTCAAATACCACATTGAtgcggtgcataatggtatcgCACATACGTGTGAtatatgcgagaaaaaattcacaagtAAATGTAATCTTAAGGCCCACGTGAATAACGTGCACAATCGTATCAGATATGAATGCGATGTATGTgcaaagacattttcacataaatattaTCTCAAAGCACACATCGATTCAGTTCATAATAAATTTGCACCAAAATGCGATATATGTCACAAGACATTCACATCAAAGGGTAATCTCCGAAACCACATCACATCTGTGCATGATAAAATCACTCATAGATGTGACACTTGCGGAAAAAAGTTCATGTATAAGAGCAGTcttaaaatccacatcgatcgGTTTCATAATGGTATCACCCATATGTGTGACACATGCGGAAAAAAGTTCAAGAGTAAGGGCAATCTTAAAATCCACATTGATGCGATGCACAATGATGTCGCATATACGTGTGAtatatgcgagaaaaaattcacaactAAAAGTAATCTTAAGGTCCACGTGAATAACGTGCACAATCGTATCAGATATGCATGCGATGTATGTACAAagacattttcaaataatagtgatctcaaaaaacacatcgattcaaTTCATCGTAAACTCGCACCAAAATGTGATATATGTCACAAGACATTCACATCAAAGGGTAATCTCCGAAACCACATCACATCTGTGCATGATAAAATCACTCATAGATGTGACACTTGCGGAAAAAACTTCATGTATAAGAGCAGTcttaaaatccacatcgatcgGTTTCATAATGGTATCACCCATGTATGTGACACTTGcggaaaaaagttcaagtatAAGACCAGTCTTAAAAACCACAtcaatcattttcataatggTATCACCCATATGTGTGACACATGCGGAAAAAAGTGCAAATATAAGAGCAATCTTAAAATCCACATTGATGCGATGCACAATGATGTCGCATATacgtgtgatatttgcgagaaaaaattcacaactAAAGGTAATCTTAAGGCCCACGTGAATAACGTGCACAATCCTATCAGATATGAATGCGATGTATGTACaaagacattttcatttaaaagtggtcttaaaaaacacatcgattcaaTTCATCGTAAACTCGCACCAAAATGTGATATATGTCACAAGTCATTCGCAACAAATGCTACCCTCAAAGTTCACATCTATACGTTGCATAAAGGTATCATCCATAATTGA
- Protein Sequence
- MESSDLLNCAIRVKQEVSHVSLVENDNEMIDEKPDLSNFQLLSFSPENSNHTLQKCEENQGSKLDNEVEIVVECEDVKPNFDLLAVKKIDDYSPNHLGNVIDSDDKTLNIIKIEPPGEVKKEIVCSIAEESNLRLECELIGRDKKNRNTKKADDQYKLKAQIETMHSNSIHACKVCGKTFKRKDHLKYHIDAVHNGIAHTCDICEKKFTSKCNLKAHVNNVHNRIRYECDVCAKTFSHKYYLKAHIDSVHNKFAPKCDICHKTFTSKGNLRNHITSVHDKITHRCDTCGKKFMYKSSLKIHIDRFHNGITHMCDTCGKKFKSKGNLKIHIDAMHNDVAYTCDICEKKFTTKSNLKVHVNNVHNRIRYACDVCTKTFSNNSDLKKHIDSIHRKLAPKCDICHKTFTSKGNLRNHITSVHDKITHRCDTCGKNFMYKSSLKIHIDRFHNGITHVCDTCGKKFKYKTSLKNHINHFHNGITHMCDTCGKKCKYKSNLKIHIDAMHNDVAYTCDICEKKFTTKGNLKAHVNNVHNPIRYECDVCTKTFSFKSGLKKHIDSIHRKLAPKCDICHKSFATNATLKVHIYTLHKGIIHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485071;
- 90% Identity
- iTF_01485071;
- 80% Identity
- iTF_01485071;