Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1484995-1488242[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.2e-06 5.2e-05 23.0 1.8 1 23 171 194 171 195 0.95

2 15 4.2e-07 6.8e-06 25.7 2.1 1 23 199 222 199 222 0.93

3 15 4.8e-07 7.9e-06 25.6 2.0 2 23 228 250 228 250 0.95

4 15 1.9e-07 3.1e-06 26.8 0.6 1 23 256 279 256 279 0.96

5 15 0.0017 0.028 14.4 0.3 1 23 284 307 284 307 0.91

6 15 2.4e-05 0.00039 20.2 1.6 1 23 312 335 312 335 0.95

7 15 3.2e-05 0.00053 19.8 1.0 1 23 340 363 340 363 0.93

8 15 2.9e-07 4.7e-06 26.2 0.2 2 23 369 391 369 391 0.96

9 15 0.00066 0.011 15.7 2.1 1 23 397 420 397 420 0.92

10 15 9.1e-05 0.0015 18.4 4.0 1 23 425 448 425 449 0.94

11 15 0.0053 0.087 12.8 0.3 3 23 455 476 454 476 0.94

12 15 7.4e-08 1.2e-06 28.1 0.5 2 23 482 504 481 504 0.94

13 15 1.9e-06 3e-05 23.7 0.5 1 23 510 533 510 533 0.96

14 15 7.3e-07 1.2e-05 25.0 2.8 1 23 538 561 538 561 0.97

15 15 5.5e-06 9e-05 22.2 0.6 1 23 567 590 567 590 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.2e-06	5.2e-05	23.0	1.8	1	23	171	194	171	195	0.95
2	15	4.2e-07	6.8e-06	25.7	2.1	1	23	199	222	199	222	0.93
3	15	4.8e-07	7.9e-06	25.6	2.0	2	23	228	250	228	250	0.95
4	15	1.9e-07	3.1e-06	26.8	0.6	1	23	256	279	256	279	0.96
5	15	0.0017	0.028	14.4	0.3	1	23	284	307	284	307	0.91
6	15	2.4e-05	0.00039	20.2	1.6	1	23	312	335	312	335	0.95
7	15	3.2e-05	0.00053	19.8	1.0	1	23	340	363	340	363	0.93
8	15	2.9e-07	4.7e-06	26.2	0.2	2	23	369	391	369	391	0.96
9	15	0.00066	0.011	15.7	2.1	1	23	397	420	397	420	0.92
10	15	9.1e-05	0.0015	18.4	4.0	1	23	425	448	425	449	0.94
11	15	0.0053	0.087	12.8	0.3	3	23	455	476	454	476	0.94
12	15	7.4e-08	1.2e-06	28.1	0.5	2	23	482	504	481	504	0.94
13	15	1.9e-06	3e-05	23.7	0.5	1	23	510	533	510	533	0.96
14	15	7.3e-07	1.2e-05	25.0	2.8	1	23	538	561	538	561	0.97
15	15	5.5e-06	9e-05	22.2	0.6	1	23	567	590	567	590	0.96

Sequence Information

Coding Sequence: ATGGAATCAAGAGCTATCTTCAACTGTGCCGTAagagtAAAAGAAGAACCTTCTGACATCtcaatcattgaaaatgattataatataattgacaaTACACTTGAtgtcaacaattttcaattcctCAAACATCAGCAAGAAAATCAAatTCATGTGCttcaaaaatttgacaataatCACGAAAGTGAACTTGATGAGTTGGCGATCGAGTTGGAATGTAAAGACATGAAGCCGAGCTTGGATTTATTAGCTGttacgaaaattgaaaattgttctgAAGATCACTTGGCGGCTATTGAAAATAGTAACGAACATCAAactcaaaacaaaattaaattagaagCTTTAGatgcagtaaaaaaagaatcgtttGTGGACGACGCCAATCAATTTAATATGAACTCAAACTGTGAACTcagcgagcgaaagaaaagaaaaacagttgTAAAAAATGTGGATTATAATCATAAACTCCAAAAACATATTGATATGccgaataataaaatcacataTCCTTGTGACACATGTGGAAAGGCATTCGCACATAAGAGAAACCTCAAAGTTCACATCGACTCGATGCACCATAAAATCACTCATGTCTGTGAAGtatgtggaaagtcattcTCACATAAAAGTTATCTCAAGAAACATATTGAAGCGATACATAATGGTAAAACTCCGACATGCCATATCTGCGGAAAGACGTTCTCTCAAAAGAATAATCTCCaaacccacatcgattcagtgcataatagAACGAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCAAAAGGGCAATCTTCAAACCCACATTGATTCAAAACATAATAAGATCACTCATGCCTGTGCTATATGTGGAAAGGCATTCAGACAACGGGAAGGTCTCAAATTCCATATCGACTCGGTGCATCTTAAAGTTACCCATAGTTGTGACAaatgtggaaagtcattcaGACGTAAGAGCATTCTTAAAATACACATCGAATCGGTGCatcagaaaattattcatacctgtgacttatgtgaaaagtcaTTCTCACTTAAAGATtctctcaaaaaacatattgaaGCGATACATAATGGTAAAACTCGGACATGCGATATCTGCGGAAAGACGTTCTCTTACAAGGGTAATCTCCAAATCCACATCAACtcagtgcataatggtaaAATCACCCATTCTTGTGATAcatgtggaaagtcattcaAACAACAAAAAGGTCTCAAATTCCATATCGACTCGGTACATCTCAAAGTCACCCATAGTTGTGACAaatgtggaaagtcattcaGACGTAAGAGCATTCTTAAAAATCACATCGACTCAGTGCACCATAAAATCACTCATGGCTGtgacttatgtgaaaagtcaTTCTTATTTAAAAGTTCTCTCAAGAGACATATTGAAGCGATACATAATGGTAAAACTTCGACATGCGATATCTGCGGAAAGACGTTCTCTCGAAAGAGTAATCTTCAAACCCACATAGTTTCGGTGCATAATAGAACAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGgatgttttgaaaaatcatattgatTCCACGCATAATGGCATCACCTACCCGTGCGATttttgcggaaagacattttcccaaaaatgtaatttgaaaaCTCACATCAATTCGGTACATAATAGAACAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTTTCGCGAAAGTTTGTTCTGAAAAATCATATCGATTCGATACATAACTGA
Protein Sequence: MESRAIFNCAVRVKEEPSDISIIENDYNIIDNTLDVNNFQFLKHQQENQIHVLQKFDNNHESELDELAIELECKDMKPSLDLLAVTKIENCSEDHLAAIENSNEHQTQNKIKLEALDAVKKESFVDDANQFNMNSNCELSERKKRKTVVKNVDYNHKLQKHIDMPNNKITYPCDTCGKAFAHKRNLKVHIDSMHHKITHVCEVCGKSFSHKSYLKKHIEAIHNGKTPTCHICGKTFSQKNNLQTHIDSVHNRTKSYECDVCGKKFSQKGNLQTHIDSKHNKITHACAICGKAFRQREGLKFHIDSVHLKVTHSCDKCGKSFRRKSILKIHIESVHQKIIHTCDLCEKSFSLKDSLKKHIEAIHNGKTRTCDICGKTFSYKGNLQIHINSVHNGKITHSCDTCGKSFKQQKGLKFHIDSVHLKVTHSCDKCGKSFRRKSILKNHIDSVHHKITHGCDLCEKSFLFKSSLKRHIEAIHNGKTSTCDICGKTFSRKSNLQTHIVSVHNRTKSYECDVCGKKFSRKDVLKNHIDSTHNGITYPCDFCGKTFSQKCNLKTHINSVHNRTKSYECDVCGKKFSRKFVLKNHIDSIHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484889;
90% Identity: iTF_01484889;
80% Identity: iTF_01484889;