Tpre003659.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1484995-1488242[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.36 27 4.4 1.6 19 43 173 194 158 195 0.88 2 15 0.37 27 4.4 1.5 18 43 200 222 198 223 0.89 3 15 0.0018 0.13 11.8 2.7 18 44 228 251 222 251 0.92 4 15 0.0018 0.14 11.7 0.4 15 44 254 280 252 280 0.90 5 15 0.94 70 3.1 0.2 19 43 286 307 283 308 0.87 6 15 0.39 29 4.3 1.3 19 44 314 336 310 336 0.92 7 15 0.8 60 3.3 0.5 18 43 341 363 337 364 0.82 8 15 0.0014 0.11 12.1 1.6 5 44 357 392 353 392 0.77 9 15 0.94 70 3.0 0.4 19 43 399 420 396 421 0.92 10 15 1 78 2.9 3.6 19 43 427 448 424 449 0.93 11 15 2.9 2.2e+02 1.5 0.2 19 43 455 476 454 477 0.84 12 15 1.3e-05 0.001 18.6 2.3 6 44 471 505 466 505 0.81 13 15 0.0047 0.35 10.4 0.4 15 44 508 534 506 534 0.85 14 15 0.0019 0.14 11.7 1.0 19 44 540 562 538 562 0.95 15 15 0.026 1.9 8.0 0.5 15 43 565 590 563 591 0.76
Sequence Information
- Coding Sequence
- ATGGAATCAAGAGCTATCTTCAACTGTGCCGTAagagtAAAAGAAGAACCTTCTGACATCtcaatcattgaaaatgattataatataattgacaaTACACTTGAtgtcaacaattttcaattcctCAAACATCAGCAAGAAAATCAAatTCATGTGCttcaaaaatttgacaataatCACGAAAGTGAACTTGATGAGTTGGCGATCGAGTTGGAATGTAAAGACATGAAGCCGAGCTTGGATTTATTAGCTGttacgaaaattgaaaattgttctgAAGATCACTTGGCGGCTATTGAAAATAGTAACGAACATCAAactcaaaacaaaattaaattagaagCTTTAGatgcagtaaaaaaagaatcgtttGTGGACGACGCCAATCAATTTAATATGAACTCAAACTGTGAACTcagcgagcgaaagaaaagaaaaacagttgTAAAAAATGTGGATTATAATCATAAACTCCAAAAACATATTGATATGccgaataataaaatcacataTCCTTGTGACACATGTGGAAAGGCATTCGCACATAAGAGAAACCTCAAAGTTCACATCGACTCGATGCACCATAAAATCACTCATGTCTGTGAAGtatgtggaaagtcattcTCACATAAAAGTTATCTCAAGAAACATATTGAAGCGATACATAATGGTAAAACTCCGACATGCCATATCTGCGGAAAGACGTTCTCTCAAAAGAATAATCTCCaaacccacatcgattcagtgcataatagAACGAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCAAAAGGGCAATCTTCAAACCCACATTGATTCAAAACATAATAAGATCACTCATGCCTGTGCTATATGTGGAAAGGCATTCAGACAACGGGAAGGTCTCAAATTCCATATCGACTCGGTGCATCTTAAAGTTACCCATAGTTGTGACAaatgtggaaagtcattcaGACGTAAGAGCATTCTTAAAATACACATCGAATCGGTGCatcagaaaattattcatacctgtgacttatgtgaaaagtcaTTCTCACTTAAAGATtctctcaaaaaacatattgaaGCGATACATAATGGTAAAACTCGGACATGCGATATCTGCGGAAAGACGTTCTCTTACAAGGGTAATCTCCAAATCCACATCAACtcagtgcataatggtaaAATCACCCATTCTTGTGATAcatgtggaaagtcattcaAACAACAAAAAGGTCTCAAATTCCATATCGACTCGGTACATCTCAAAGTCACCCATAGTTGTGACAaatgtggaaagtcattcaGACGTAAGAGCATTCTTAAAAATCACATCGACTCAGTGCACCATAAAATCACTCATGGCTGtgacttatgtgaaaagtcaTTCTTATTTAAAAGTTCTCTCAAGAGACATATTGAAGCGATACATAATGGTAAAACTTCGACATGCGATATCTGCGGAAAGACGTTCTCTCGAAAGAGTAATCTTCAAACCCACATAGTTTCGGTGCATAATAGAACAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGgatgttttgaaaaatcatattgatTCCACGCATAATGGCATCACCTACCCGTGCGATttttgcggaaagacattttcccaaaaatgtaatttgaaaaCTCACATCAATTCGGTACATAATAGAACAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTTTCGCGAAAGTTTGTTCTGAAAAATCATATCGATTCGATACATAACTGA
- Protein Sequence
- MESRAIFNCAVRVKEEPSDISIIENDYNIIDNTLDVNNFQFLKHQQENQIHVLQKFDNNHESELDELAIELECKDMKPSLDLLAVTKIENCSEDHLAAIENSNEHQTQNKIKLEALDAVKKESFVDDANQFNMNSNCELSERKKRKTVVKNVDYNHKLQKHIDMPNNKITYPCDTCGKAFAHKRNLKVHIDSMHHKITHVCEVCGKSFSHKSYLKKHIEAIHNGKTPTCHICGKTFSQKNNLQTHIDSVHNRTKSYECDVCGKKFSQKGNLQTHIDSKHNKITHACAICGKAFRQREGLKFHIDSVHLKVTHSCDKCGKSFRRKSILKIHIESVHQKIIHTCDLCEKSFSLKDSLKKHIEAIHNGKTRTCDICGKTFSYKGNLQIHINSVHNGKITHSCDTCGKSFKQQKGLKFHIDSVHLKVTHSCDKCGKSFRRKSILKNHIDSVHHKITHGCDLCEKSFLFKSSLKRHIEAIHNGKTSTCDICGKTFSRKSNLQTHIVSVHNRTKSYECDVCGKKFSRKDVLKNHIDSTHNGITYPCDFCGKTFSQKCNLKTHINSVHNRTKSYECDVCGKKFSRKFVLKNHIDSIHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485066;
- 90% Identity
- iTF_01485066;
- 80% Identity
- iTF_01485066;