Tpre007828.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1194509-1196650[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.3e-05 0.00086 19.1 2.4 1 23 193 216 193 216 0.96 2 15 1.1e-05 0.00018 21.3 3.3 1 23 221 244 221 244 0.94 3 15 4.2e-07 6.8e-06 25.7 3.2 1 23 249 272 249 272 0.94 4 15 1.8e-06 3e-05 23.7 4.3 1 23 277 300 277 300 0.97 5 15 4.2e-08 6.8e-07 28.9 1.3 1 23 305 328 305 328 0.93 6 15 3.5e-05 0.00057 19.7 3.9 1 23 333 356 333 356 0.91 7 15 2.2e-05 0.00037 20.3 1.2 1 23 361 384 361 384 0.94 8 15 1.9e-08 3e-07 30.0 1.3 1 23 389 412 389 412 0.98 9 15 3e-08 4.9e-07 29.3 0.5 1 23 417 440 417 440 0.96 10 15 1.2e-07 1.9e-06 27.5 1.3 1 23 445 468 445 468 0.91 11 15 2.9e-06 4.7e-05 23.1 3.9 1 23 473 496 473 496 0.97 12 15 4.1e-06 6.7e-05 22.6 3.9 1 23 501 524 501 524 0.96 13 15 0.026 0.43 10.7 0.1 5 23 533 552 532 552 0.93 14 15 0.0078 0.13 12.3 0.3 5 19 561 575 560 575 0.96 15 15 0.00039 0.0064 16.4 2.0 2 23 586 608 586 609 0.94
Sequence Information
- Coding Sequence
- ATGTTAGTTAGTTTGATGTGTAACACTACAACAGAACAATCGTCGTTAACTAAAATTCAAGTTAAAAACATGGAATCCAGTGGTTTATATcctgtcagAGTCAAAAATGAACCTGTAGACGTGTCGCCTAATGAAAATAATGGTATAGTAACTGACAAGACACTCGACTTATACCCTCTATCATTTCTGCAAGAAAATCCAGTAAGAGATGATACTTATATCAAAATCCTTCAAGAATATGACGAAAATCATGAACGTAAGTTCAATGATGATATAGAGATAGTTATAGAATGCGAAGACGTAAAGCCCAGTATGGATTTATTAGTAGTTAGAAAAATGGACAATTATCCTTCAAATCACTTGCTGGATGTGAAATGTAGTTTTGATTATAAAACTAATGATAGAATTAAAATACCCGAACCCGTGGGTGAAATGAAACATGAATTTTTCGGCGAAGAAGCAATGCAATTCAAATTTGATCGAGTACTCAGcggacaaaatgaaaaaattacggaaaagtttaataacaaaaataggCTCAAAGCACACGCCAGCTCGGCTCGCGAAGATAAAAGTCATTCGTGTAAAATATGCAGAAAGAAATTTGCAAATGAGCCTAATTTGAATAGACATGTCAAATCTTCGCATGATCACATAACCCACgcatgtgatatatgtcaaaagacattttcacaaaaaggtCATCTCAAGACCCACATCGATTCCCAGCATAATAAAACCATGCACGAATGCCACgtatgcggaaagacattttcacaaaaaagtaatctcaagaCCCACGTagattcagtacataatggtctCACTTATAAATGCGATATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACATCGaatcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacgaAAAGATCATCTCAAGACCCACATCGATGCAGTGCATAATAGTCTCACTTATAAATGCGATACATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACGTAGATGCAGTACACAATCgtgtcacacatgcatgccgtatatgcggcaagacattttcacgaAAAGATAGTATCAAgacccacatcgattcagtacataatggtctGACATATAAATGCGATAtatgcggcaagacattttcacaaaaagttCATCTCAAGGCCCACAtcaattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacaaaaagttaatttgaaaaatcacatcgattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacgaAAAGATCATCTCAAGACCCACGTAGATGCAGTGCATAATGGTCTCACTTATAAATGTGGTATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACATCGAATCAGTACATACTGGTCTCACTTATAAATGCGGTATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAgacccacatcgattcagtgcacaatggtgttGAATATGCAAGTGATAtatgtgaaaataaatacgcTCAAAAGGTAAATCTCAAGAGGCATATCAAATTGTTGCATAAAGGTATCCCTTATGCACttgatatttgtggaaaaaaatctaagacgaagagtaatctcaaaaagCACGACAATTCGGTGCCCAATAATGCAAGACCTAAATGTGATAGAtgcggaaaaatatttatacggGTGAGTCATCTTAAAATCCACGTGGATTCGGTGCATCACTCAAGctcttaa
- Protein Sequence
- MLVSLMCNTTTEQSSLTKIQVKNMESSGLYPVRVKNEPVDVSPNENNGIVTDKTLDLYPLSFLQENPVRDDTYIKILQEYDENHERKFNDDIEIVIECEDVKPSMDLLVVRKMDNYPSNHLLDVKCSFDYKTNDRIKIPEPVGEMKHEFFGEEAMQFKFDRVLSGQNEKITEKFNNKNRLKAHASSAREDKSHSCKICRKKFANEPNLNRHVKSSHDHITHACDICQKTFSQKGHLKTHIDSQHNKTMHECHVCGKTFSQKSNLKTHVDSVHNGLTYKCDICGKSYTYKHHLKTHIESVHNGLTYKCDICGKTFSRKDHLKTHIDAVHNSLTYKCDTCGKSYTYKHHLKTHVDAVHNRVTHACRICGKTFSRKDSIKTHIDSVHNGLTYKCDICGKTFSQKVHLKAHINSVHNGLTYKCDICGKTFSQKVNLKNHIDSVHNGLTYKCDICGKTFSRKDHLKTHVDAVHNGLTYKCGICGKSYTYKHHLKTHIESVHTGLTYKCGICGKSYTYKHHLKTHIDSVHNGVEYASDICENKYAQKVNLKRHIKLLHKGIPYALDICGKKSKTKSNLKKHDNSVPNNARPKCDRCGKIFIRVSHLKIHVDSVHHSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484881;
- 90% Identity
- iTF_01484881;
- 80% Identity
- iTF_01484881;