Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1194509-1196650[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0041 0.31 10.6 2.3 6 43 183 216 178 217 0.83

2 15 0.051 3.8 7.1 0.9 19 44 223 245 218 245 0.89

3 15 0.00017 0.013 15.0 3.0 13 44 245 273 240 273 0.90

4 15 0.0078 0.58 9.7 3.5 18 44 278 301 275 301 0.93

5 15 0.0051 0.38 10.3 0.7 18 43 306 328 303 329 0.81

6 15 2.1 1.6e+02 1.9 5.2 17 43 333 356 323 361 0.80

7 15 0.0046 0.35 10.4 3.4 18 43 362 384 347 385 0.70

8 15 0.0064 0.48 10.0 0.8 18 44 390 413 386 413 0.89

9 15 0.00048 0.036 13.6 0.3 18 44 418 441 415 441 0.93

10 15 0.0097 0.72 9.4 0.8 18 38 446 463 443 469 0.75

11 15 0.01 0.77 9.3 5.9 14 43 470 496 458 497 0.80

12 15 0.0073 0.54 9.8 3.4 18 44 502 525 499 525 0.92

13 15 0.69 51 3.5 0.4 21 43 533 552 532 553 0.86

14 15 9.9 7.4e+02 -0.2 0.2 21 38 561 575 560 578 0.87

15 15 2.2 1.7e+02 1.9 2.4 2 43 571 608 570 609 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0041	0.31	10.6	2.3	6	43	183	216	178	217	0.83
2	15	0.051	3.8	7.1	0.9	19	44	223	245	218	245	0.89
3	15	0.00017	0.013	15.0	3.0	13	44	245	273	240	273	0.90
4	15	0.0078	0.58	9.7	3.5	18	44	278	301	275	301	0.93
5	15	0.0051	0.38	10.3	0.7	18	43	306	328	303	329	0.81
6	15	2.1	1.6e+02	1.9	5.2	17	43	333	356	323	361	0.80
7	15	0.0046	0.35	10.4	3.4	18	43	362	384	347	385	0.70
8	15	0.0064	0.48	10.0	0.8	18	44	390	413	386	413	0.89
9	15	0.00048	0.036	13.6	0.3	18	44	418	441	415	441	0.93
10	15	0.0097	0.72	9.4	0.8	18	38	446	463	443	469	0.75
11	15	0.01	0.77	9.3	5.9	14	43	470	496	458	497	0.80
12	15	0.0073	0.54	9.8	3.4	18	44	502	525	499	525	0.92
13	15	0.69	51	3.5	0.4	21	43	533	552	532	553	0.86
14	15	9.9	7.4e+02	-0.2	0.2	21	38	561	575	560	578	0.87
15	15	2.2	1.7e+02	1.9	2.4	2	43	571	608	570	609	0.78

Sequence Information

Coding Sequence: ATGTTAGTTAGTTTGATGTGTAACACTACAACAGAACAATCGTCGTTAACTAAAATTCAAGTTAAAAACATGGAATCCAGTGGTTTATATcctgtcagAGTCAAAAATGAACCTGTAGACGTGTCGCCTAATGAAAATAATGGTATAGTAACTGACAAGACACTCGACTTATACCCTCTATCATTTCTGCAAGAAAATCCAGTAAGAGATGATACTTATATCAAAATCCTTCAAGAATATGACGAAAATCATGAACGTAAGTTCAATGATGATATAGAGATAGTTATAGAATGCGAAGACGTAAAGCCCAGTATGGATTTATTAGTAGTTAGAAAAATGGACAATTATCCTTCAAATCACTTGCTGGATGTGAAATGTAGTTTTGATTATAAAACTAATGATAGAATTAAAATACCCGAACCCGTGGGTGAAATGAAACATGAATTTTTCGGCGAAGAAGCAATGCAATTCAAATTTGATCGAGTACTCAGcggacaaaatgaaaaaattacggaaaagtttaataacaaaaataggCTCAAAGCACACGCCAGCTCGGCTCGCGAAGATAAAAGTCATTCGTGTAAAATATGCAGAAAGAAATTTGCAAATGAGCCTAATTTGAATAGACATGTCAAATCTTCGCATGATCACATAACCCACgcatgtgatatatgtcaaaagacattttcacaaaaaggtCATCTCAAGACCCACATCGATTCCCAGCATAATAAAACCATGCACGAATGCCACgtatgcggaaagacattttcacaaaaaagtaatctcaagaCCCACGTagattcagtacataatggtctCACTTATAAATGCGATATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACATCGaatcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacgaAAAGATCATCTCAAGACCCACATCGATGCAGTGCATAATAGTCTCACTTATAAATGCGATACATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACGTAGATGCAGTACACAATCgtgtcacacatgcatgccgtatatgcggcaagacattttcacgaAAAGATAGTATCAAgacccacatcgattcagtacataatggtctGACATATAAATGCGATAtatgcggcaagacattttcacaaaaagttCATCTCAAGGCCCACAtcaattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacaaaaagttaatttgaaaaatcacatcgattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacgaAAAGATCATCTCAAGACCCACGTAGATGCAGTGCATAATGGTCTCACTTATAAATGTGGTATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACATCGAATCAGTACATACTGGTCTCACTTATAAATGCGGTATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAgacccacatcgattcagtgcacaatggtgttGAATATGCAAGTGATAtatgtgaaaataaatacgcTCAAAAGGTAAATCTCAAGAGGCATATCAAATTGTTGCATAAAGGTATCCCTTATGCACttgatatttgtggaaaaaaatctaagacgaagagtaatctcaaaaagCACGACAATTCGGTGCCCAATAATGCAAGACCTAAATGTGATAGAtgcggaaaaatatttatacggGTGAGTCATCTTAAAATCCACGTGGATTCGGTGCATCACTCAAGctcttaa
Protein Sequence: MLVSLMCNTTTEQSSLTKIQVKNMESSGLYPVRVKNEPVDVSPNENNGIVTDKTLDLYPLSFLQENPVRDDTYIKILQEYDENHERKFNDDIEIVIECEDVKPSMDLLVVRKMDNYPSNHLLDVKCSFDYKTNDRIKIPEPVGEMKHEFFGEEAMQFKFDRVLSGQNEKITEKFNNKNRLKAHASSAREDKSHSCKICRKKFANEPNLNRHVKSSHDHITHACDICQKTFSQKGHLKTHIDSQHNKTMHECHVCGKTFSQKSNLKTHVDSVHNGLTYKCDICGKSYTYKHHLKTHIESVHNGLTYKCDICGKTFSRKDHLKTHIDAVHNSLTYKCDTCGKSYTYKHHLKTHVDAVHNRVTHACRICGKTFSRKDSIKTHIDSVHNGLTYKCDICGKTFSQKVHLKAHINSVHNGLTYKCDICGKTFSQKVNLKNHIDSVHNGLTYKCDICGKTFSRKDHLKTHVDAVHNGLTYKCGICGKSYTYKHHLKTHIESVHTGLTYKCGICGKSYTYKHHLKTHIDSVHNGVEYASDICENKYAQKVNLKRHIKLLHKGIPYALDICGKKSKTKSNLKKHDNSVPNNARPKCDRCGKIFIRVSHLKIHVDSVHHSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485065;
90% Identity: iTF_01485065;
80% Identity: iTF_01485065;