Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:331040-335526[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00048 0.0079 16.1 2.0 1 23 192 215 192 215 0.97

2 18 0.00094 0.015 15.2 2.8 1 23 220 243 220 243 0.97

3 18 0.00017 0.0028 17.5 0.0 2 23 249 271 248 271 0.94

4 18 7.5e-05 0.0012 18.7 0.6 1 23 276 299 276 299 0.97

5 18 7e-05 0.0011 18.8 2.3 1 23 304 327 304 327 0.96

6 18 0.00015 0.0025 17.7 0.3 2 23 333 355 333 355 0.96

7 18 5.6e-05 0.00092 19.1 0.3 2 23 361 383 360 383 0.95

8 18 1.7e-06 2.7e-05 23.8 0.8 1 23 388 411 388 411 0.95

9 18 3.9e-06 6.3e-05 22.7 1.0 1 23 416 439 416 439 0.95

10 18 1.4e-05 0.00023 20.9 3.7 1 23 444 467 444 467 0.94

11 18 3.8e-06 6.2e-05 22.7 1.5 1 23 472 495 472 495 0.97

12 18 6e-05 0.00099 18.9 0.5 1 23 500 523 500 523 0.92

13 18 1.6e-05 0.00027 20.7 1.6 1 23 528 551 528 551 0.97

14 18 2.2e-05 0.00035 20.3 0.4 1 23 556 579 556 579 0.96

15 18 0.15 2.4 8.3 3.3 1 23 584 607 584 607 0.89

16 18 0.00037 0.0061 16.5 0.3 1 23 612 635 612 635 0.96

17 18 7.1e-06 0.00012 21.9 2.9 1 23 640 663 640 663 0.95

18 18 1.7e-05 0.00028 20.7 2.9 1 23 668 691 668 691 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00048	0.0079	16.1	2.0	1	23	192	215	192	215	0.97
2	18	0.00094	0.015	15.2	2.8	1	23	220	243	220	243	0.97
3	18	0.00017	0.0028	17.5	0.0	2	23	249	271	248	271	0.94
4	18	7.5e-05	0.0012	18.7	0.6	1	23	276	299	276	299	0.97
5	18	7e-05	0.0011	18.8	2.3	1	23	304	327	304	327	0.96
6	18	0.00015	0.0025	17.7	0.3	2	23	333	355	333	355	0.96
7	18	5.6e-05	0.00092	19.1	0.3	2	23	361	383	360	383	0.95
8	18	1.7e-06	2.7e-05	23.8	0.8	1	23	388	411	388	411	0.95
9	18	3.9e-06	6.3e-05	22.7	1.0	1	23	416	439	416	439	0.95
10	18	1.4e-05	0.00023	20.9	3.7	1	23	444	467	444	467	0.94
11	18	3.8e-06	6.2e-05	22.7	1.5	1	23	472	495	472	495	0.97
12	18	6e-05	0.00099	18.9	0.5	1	23	500	523	500	523	0.92
13	18	1.6e-05	0.00027	20.7	1.6	1	23	528	551	528	551	0.97
14	18	2.2e-05	0.00035	20.3	0.4	1	23	556	579	556	579	0.96
15	18	0.15	2.4	8.3	3.3	1	23	584	607	584	607	0.89
16	18	0.00037	0.0061	16.5	0.3	1	23	612	635	612	635	0.96
17	18	7.1e-06	0.00012	21.9	2.9	1	23	640	663	640	663	0.95
18	18	1.7e-05	0.00028	20.7	2.9	1	23	668	691	668	691	0.95

Sequence Information

Coding Sequence: ATGTTGAAAGAGGAACCTTATGAAGTGTCGTTGGATGAATGTGGAGATGGAATAATGAATGAGCCAATTGATCATAAAAATGTCCAACAATTGCCTTTTCAAGATAATTTGGTCCTTCGGATTCCAAGATGCGACGATATGATGATTGAATTCGAATGTCAAGATGTAAAGCCCGATAAGAATTTATTGCTACCAAAGAAAATGGATTtacacaaaattaaaaaagaaccCCCAGAGAATTTGGAAGAAGAAATCATCGACGACATGGCCGAGGAATCGAATCCGAACGGTGAACTCAATAACGACATAGAAATTGAATTCGAATGTCAAGACGAGAAGCCTAGTGTGGATTTCTTAGTAGGGCATAAAAGTGATGATAACTCTGGAAATCAATTAcagaatgataaaaatagtcataaaagtcaaaatattatgaaagcAGAAATTAAGAAGGAAGTAAAGGAAGATATTCTTAGCGACGTTCCAGAGGAATTAAATTTGGACTCTGAGGGGgttgaacaaaatgaaaataatcaacgCAGTCTCAGGGCACACAGTGACAGTGGTAGCAACTACGCATGTGAAATatgtggaaaaaattatttaagaaaaCATCATCTCCAAATCCACATCGATACAATGCATAGTAACATCACTTATAAATGTGatgtatgcgaaaaaaaattcgcttgTAAAAGTTATCTCCGAAGTCACATTTTGAGGATACACAGCGAAATCAAACTTATATGTGACATATGCGGAAAGGAATACTCTACGATTGGTGAGCTAAAAAACCACATAGATTCGATACATAATGGTAAGAGATATACATGCAATCtgtgcggaaagacattccAGCGCAAAGACAGTATCGGAACCCACATCAATAGAGCGCATAAAGGTATCAAACATAAATGCGGTACGTGTGGGAAAACATATTCAGCTAAGAGTCATCTCCAActccacatcgattcgatacATAATGGTATCGGGCCCAAATGTGAAATATGTGGAAAGATATTTTCACGCTATTTAACTATGCAACgccacatcgattcgattcATAAAGGTATCACTAAGTCATGCAAAATATGTGGAAGGGCATTTCCTCTTCAAACTAATCTCAAATTACACATGGATTCTGTGCACAAAGGTATTGACCATCCGTGTGatgtatgcggaaagaaattcaaacGAAAAGATTCCCTCCAAGAACATATAGATTCggttcataataaaatcactcatACGTGTGCCatatgcggaaagacataCAGACGGAAGGATTCCCTCAAAGAACACATTGATTCGATTCATAGGGAAATAACCCATGCGTGTGaaatatgtaaaaagaaatttaaacgCAAGGACCACCTCAAAGTCCATATCGATTCggaacataataaaataactcatAAATGTGATATATGTGGAAACACATTCAAAAGCAGAACCAATCTCACAGTCCACATCAATTCGATCCATATGGGCGTTACTCATTCATGCGATACGTGTGGTAAGAAATTCGCATCGAATGGTTATCTccaaattcacatcgatgcatCGCATAATAAAGTCACTTATGAATGCGATATATGCAAAAAGAAGTTTGCgcataaaaattctctcaaACTCCACATCGAATCGATACATATGGGCAGGAGACATAAATGCGGTGAGTGCggacaaaaatttaaagtcaGTAGTgctctcaaaatccacatagAATCAGTGCATAGTAACATTACTCATGAATGTGATGAATGCAAAAAGACATTCGCCTGTAAAAATTATCTCCGATTGCACACCGATgcggtgcataataaaattacttacgCATGCGCTTTATGCGGTACGAAATTCAAGGCTAAGCCTTATCTAAAAAGGCACATCGATACGCAGCATAATAAAAACTCCCACGCATGTGACAGATGCGAGAAGACATTTAAACGAAAGGAtaatctcaaaaatcacatcgatACGCAGCATAATAAAATCTCCCACGCATGTGACAGATGCGAGAAGACATTTAAACGAAAAGATGCtctcaaaaagcacatcgATACAAAGCATAAAAGTAAAACGCGCAtggtaaaagtgaaaaaattaaaaccaaaGGATTAA
Protein Sequence: MLKEEPYEVSLDECGDGIMNEPIDHKNVQQLPFQDNLVLRIPRCDDMMIEFECQDVKPDKNLLLPKKMDLHKIKKEPPENLEEEIIDDMAEESNPNGELNNDIEIEFECQDEKPSVDFLVGHKSDDNSGNQLQNDKNSHKSQNIMKAEIKKEVKEDILSDVPEELNLDSEGVEQNENNQRSLRAHSDSGSNYACEICGKNYLRKHHLQIHIDTMHSNITYKCDVCEKKFACKSYLRSHILRIHSEIKLICDICGKEYSTIGELKNHIDSIHNGKRYTCNLCGKTFQRKDSIGTHINRAHKGIKHKCGTCGKTYSAKSHLQLHIDSIHNGIGPKCEICGKIFSRYLTMQRHIDSIHKGITKSCKICGRAFPLQTNLKLHMDSVHKGIDHPCDVCGKKFKRKDSLQEHIDSVHNKITHTCAICGKTYRRKDSLKEHIDSIHREITHACEICKKKFKRKDHLKVHIDSEHNKITHKCDICGNTFKSRTNLTVHINSIHMGVTHSCDTCGKKFASNGYLQIHIDASHNKVTYECDICKKKFAHKNSLKLHIESIHMGRRHKCGECGQKFKVSSALKIHIESVHSNITHECDECKKTFACKNYLRLHTDAVHNKITYACALCGTKFKAKPYLKRHIDTQHNKNSHACDRCEKTFKRKDNLKNHIDTQHNKISHACDRCEKTFKRKDALKKHIDTKHKSKTRMVKVKKLKPKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484980;
90% Identity: iTF_01484980;
80% Identity: iTF_01484980;