Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:258214-259863[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0013 0.021 14.7 2.2 1 23 62 85 62 85 0.96

2 16 1.2e-05 0.00019 21.2 1.0 1 23 90 113 90 113 0.95

3 16 3.4e-05 0.00055 19.7 0.2 1 23 118 141 118 141 0.95

4 16 1.2e-07 1.9e-06 27.5 1.2 1 23 146 169 146 169 0.96

5 16 2.9e-07 4.7e-06 26.3 0.4 1 23 174 197 174 197 0.97

6 16 4.2e-08 6.8e-07 28.9 0.5 1 23 202 225 202 225 0.97

7 16 9.8e-07 1.6e-05 24.6 0.5 1 23 230 253 230 253 0.96

8 16 1.9e-05 0.00031 20.5 2.1 1 23 258 281 258 281 0.95

9 16 3.6e-05 0.00058 19.7 1.8 1 23 286 309 286 309 0.96

10 16 8.8e-06 0.00014 21.6 0.6 1 23 314 337 314 337 0.95

11 16 2.6e-06 4.2e-05 23.3 1.1 1 23 342 365 342 365 0.94

12 16 3e-07 4.9e-06 26.2 2.1 1 23 370 393 370 393 0.96

13 16 1.8e-05 0.00029 20.6 0.4 2 23 399 421 398 421 0.95

14 16 0.00016 0.0026 17.6 2.0 1 23 426 449 426 449 0.95

15 16 0.00039 0.0064 16.4 0.7 1 23 454 477 454 477 0.96

16 16 0.0017 0.028 14.4 0.9 1 17 482 498 482 499 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0013	0.021	14.7	2.2	1	23	62	85	62	85	0.96
2	16	1.2e-05	0.00019	21.2	1.0	1	23	90	113	90	113	0.95
3	16	3.4e-05	0.00055	19.7	0.2	1	23	118	141	118	141	0.95
4	16	1.2e-07	1.9e-06	27.5	1.2	1	23	146	169	146	169	0.96
5	16	2.9e-07	4.7e-06	26.3	0.4	1	23	174	197	174	197	0.97
6	16	4.2e-08	6.8e-07	28.9	0.5	1	23	202	225	202	225	0.97
7	16	9.8e-07	1.6e-05	24.6	0.5	1	23	230	253	230	253	0.96
8	16	1.9e-05	0.00031	20.5	2.1	1	23	258	281	258	281	0.95
9	16	3.6e-05	0.00058	19.7	1.8	1	23	286	309	286	309	0.96
10	16	8.8e-06	0.00014	21.6	0.6	1	23	314	337	314	337	0.95
11	16	2.6e-06	4.2e-05	23.3	1.1	1	23	342	365	342	365	0.94
12	16	3e-07	4.9e-06	26.2	2.1	1	23	370	393	370	393	0.96
13	16	1.8e-05	0.00029	20.6	0.4	2	23	399	421	398	421	0.95
14	16	0.00016	0.0026	17.6	2.0	1	23	426	449	426	449	0.95
15	16	0.00039	0.0064	16.4	0.7	1	23	454	477	454	477	0.96
16	16	0.0017	0.028	14.4	0.9	1	17	482	498	482	499	0.94

Sequence Information

Coding Sequence: ATGGATGGCGATACAGTTCAAAacacaattaaaaaagaacCCGCGGAGGAAGTGAAACAAGAAATTACTGGTAATGCTGAAAAGGAATTGAATTTCAACTGTGAACTAATGATTACAAATAAGTTTAACAAAGAACATAACCTCGAACCACACATCGGCATGGTCCATACTACGACCCACACTCATTCATGCAATATTTGCAGCAAAACATTTTCTAATGAATATATTCTCCAGACTCATACCAATTCGGTGCACAATGGGATTACTCACACATGTGACatatgcggaaagtcatttccatataaaattaaactcaaaacccacatcgattcTGTGCACAATCAGACCAAACATCCATGTGTTATTTGCGGCAaggaattttcattaaaatggAATCTTCaaacccacatcgattcaATTCACAATGGGATTTCTCACtcttgtgatatttgcggcaaGACGTTTACAAGGAAGGGTGATTTGACAAGGCACGTTCAATCAGCGCATAATGGTGTGACCTAttcatgtaatatatgcggaaagtcatttacTCAGACAGTTAGTCTCCAAATCCACATTAAATCAATACACAATGGTATCACCTactcatgtgatatttgcggcaaGACATTTACAAGGAAGGGTGCTTTGACAAGGCACGTTAAatcagtgcataatggtgtgACCTATTCATGTTATATATGCAGCAAGTCTTTTACTCAGAAAGGTAATCTCCAAATCCACATTGAATCAATACACAATGGTGTCACCCACTCATGTGATAGTTGCGGCAAGTCATTTACTCAGAAACGTAGTCTCCTAACCCATATCGAATCGATGCACAATGGGACTAAACATATGTGCAGTACATGTGGAAAGACGTATAAAAGGAAGGGTGATGTGACAAGACACGTTCAATCAGCgcataatggtatcactcactcatgtgatatttgcggaaaatcATTTCCGTACAAAATTAGTCTCAAAAGCCACATCGATTCTGTGCACAATGGGACCAAACATGCATGTGACGTTTGcggcaagaaattttcatttaaatataatctCCAAgcccacatcgattcgatgcaCAACGGGACGAAACATATGTGCAGTACATGTGGAAAGACGTTTACAAGGAAGGGTGATCTGACGAGGCATGTTCAAACAgcgcacaatggtgtcacttCCTCGTGTGATAtctgtgaaaagacattctcaaCAAATTGGTATCTCCaaacccacatcgattcgatgcaCAATGGAACCAAATATGCATGTGACGtttgcgacaagaaatttgcatttaaatGTAATCTCCAAACCCACACCGCatcgatgcataatggtgtcacccactcatgtgatatttgcggcaaGACGTATAAAGGAAAGAATAAACTTGATTGGCACGTTCAATCAgcgcataatggtgtcacctACTCATGTGATATGTGCAAAAAGGcatttactcaaaaatatagTCTACAAAACATATGGATGGAGTTCATTTCTCGTTCGATATTGCTTAATTAa
Protein Sequence: MDGDTVQNTIKKEPAEEVKQEITGNAEKELNFNCELMITNKFNKEHNLEPHIGMVHTTTHTHSCNICSKTFSNEYILQTHTNSVHNGITHTCDICGKSFPYKIKLKTHIDSVHNQTKHPCVICGKEFSLKWNLQTHIDSIHNGISHSCDICGKTFTRKGDLTRHVQSAHNGVTYSCNICGKSFTQTVSLQIHIKSIHNGITYSCDICGKTFTRKGALTRHVKSVHNGVTYSCYICSKSFTQKGNLQIHIESIHNGVTHSCDSCGKSFTQKRSLLTHIESMHNGTKHMCSTCGKTYKRKGDVTRHVQSAHNGITHSCDICGKSFPYKISLKSHIDSVHNGTKHACDVCGKKFSFKYNLQAHIDSMHNGTKHMCSTCGKTFTRKGDLTRHVQTAHNGVTSSCDICEKTFSTNWYLQTHIDSMHNGTKYACDVCDKKFAFKCNLQTHTASMHNGVTHSCDICGKTYKGKNKLDWHVQSAHNGVTYSCDMCKKAFTQKYSLQNIWMEFISRSILLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484955;
90% Identity: iTF_01484955;
80% Identity: iTF_01484955;