Tpre002083.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:258214-259863[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.43 32 4.1 4.1 18 34 63 86 50 91 0.77 2 16 0.22 17 5.1 0.7 18 43 91 113 89 119 0.75 3 16 0.046 3.5 7.2 1.7 4 43 106 141 103 142 0.78 4 16 0.0013 0.097 12.2 0.4 19 44 148 170 143 170 0.91 5 16 0.14 10 5.7 1.0 19 43 176 197 173 198 0.78 6 16 0.0022 0.17 11.4 0.4 19 44 204 226 201 226 0.90 7 16 2.9 2.2e+02 1.5 0.7 19 43 232 253 229 254 0.80 8 16 0.52 39 3.9 0.5 19 44 260 282 257 282 0.90 9 16 0.032 2.4 7.8 3.5 15 44 284 310 282 310 0.85 10 16 0.3 22 4.7 0.1 19 44 316 338 313 338 0.86 11 16 0.015 1.1 8.8 1.6 6 44 332 366 328 366 0.84 12 16 0.007 0.52 9.9 1.4 15 44 368 394 367 394 0.88 13 16 0.52 39 3.9 0.2 19 41 400 419 398 422 0.69 14 16 3.5 2.6e+02 1.2 2.0 15 38 424 449 419 450 0.80 15 16 0.025 1.8 8.1 0.7 19 43 456 477 453 478 0.85 16 16 8 5.9e+02 0.1 0.1 19 30 484 495 481 501 0.79
Sequence Information
- Coding Sequence
- ATGGATGGCGATACAGTTCAAAacacaattaaaaaagaacCCGCGGAGGAAGTGAAACAAGAAATTACTGGTAATGCTGAAAAGGAATTGAATTTCAACTGTGAACTAATGATTACAAATAAGTTTAACAAAGAACATAACCTCGAACCACACATCGGCATGGTCCATACTACGACCCACACTCATTCATGCAATATTTGCAGCAAAACATTTTCTAATGAATATATTCTCCAGACTCATACCAATTCGGTGCACAATGGGATTACTCACACATGTGACatatgcggaaagtcatttccatataaaattaaactcaaaacccacatcgattcTGTGCACAATCAGACCAAACATCCATGTGTTATTTGCGGCAaggaattttcattaaaatggAATCTTCaaacccacatcgattcaATTCACAATGGGATTTCTCACtcttgtgatatttgcggcaaGACGTTTACAAGGAAGGGTGATTTGACAAGGCACGTTCAATCAGCGCATAATGGTGTGACCTAttcatgtaatatatgcggaaagtcatttacTCAGACAGTTAGTCTCCAAATCCACATTAAATCAATACACAATGGTATCACCTactcatgtgatatttgcggcaaGACATTTACAAGGAAGGGTGCTTTGACAAGGCACGTTAAatcagtgcataatggtgtgACCTATTCATGTTATATATGCAGCAAGTCTTTTACTCAGAAAGGTAATCTCCAAATCCACATTGAATCAATACACAATGGTGTCACCCACTCATGTGATAGTTGCGGCAAGTCATTTACTCAGAAACGTAGTCTCCTAACCCATATCGAATCGATGCACAATGGGACTAAACATATGTGCAGTACATGTGGAAAGACGTATAAAAGGAAGGGTGATGTGACAAGACACGTTCAATCAGCgcataatggtatcactcactcatgtgatatttgcggaaaatcATTTCCGTACAAAATTAGTCTCAAAAGCCACATCGATTCTGTGCACAATGGGACCAAACATGCATGTGACGTTTGcggcaagaaattttcatttaaatataatctCCAAgcccacatcgattcgatgcaCAACGGGACGAAACATATGTGCAGTACATGTGGAAAGACGTTTACAAGGAAGGGTGATCTGACGAGGCATGTTCAAACAgcgcacaatggtgtcacttCCTCGTGTGATAtctgtgaaaagacattctcaaCAAATTGGTATCTCCaaacccacatcgattcgatgcaCAATGGAACCAAATATGCATGTGACGtttgcgacaagaaatttgcatttaaatGTAATCTCCAAACCCACACCGCatcgatgcataatggtgtcacccactcatgtgatatttgcggcaaGACGTATAAAGGAAAGAATAAACTTGATTGGCACGTTCAATCAgcgcataatggtgtcacctACTCATGTGATATGTGCAAAAAGGcatttactcaaaaatatagTCTACAAAACATATGGATGGAGTTCATTTCTCGTTCGATATTGCTTAATTAa
- Protein Sequence
- MDGDTVQNTIKKEPAEEVKQEITGNAEKELNFNCELMITNKFNKEHNLEPHIGMVHTTTHTHSCNICSKTFSNEYILQTHTNSVHNGITHTCDICGKSFPYKIKLKTHIDSVHNQTKHPCVICGKEFSLKWNLQTHIDSIHNGISHSCDICGKTFTRKGDLTRHVQSAHNGVTYSCNICGKSFTQTVSLQIHIKSIHNGITYSCDICGKTFTRKGALTRHVKSVHNGVTYSCYICSKSFTQKGNLQIHIESIHNGVTHSCDSCGKSFTQKRSLLTHIESMHNGTKHMCSTCGKTYKRKGDVTRHVQSAHNGITHSCDICGKSFPYKISLKSHIDSVHNGTKHACDVCGKKFSFKYNLQAHIDSMHNGTKHMCSTCGKTFTRKGDLTRHVQTAHNGVTSSCDICEKTFSTNWYLQTHIDSMHNGTKYACDVCDKKFAFKCNLQTHTASMHNGVTHSCDICGKTYKGKNKLDWHVQSAHNGVTYSCDMCKKAFTQKYSLQNIWMEFISRSILLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485058;
- 90% Identity
- iTF_01485058;
- 80% Identity
- iTF_01485058;