Tpre003630.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:508666-511349[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3e-06 4.9e-05 23.0 0.1 1 23 172 195 172 195 0.95 2 18 3.6e-06 5.9e-05 22.8 0.8 1 23 200 223 200 223 0.95 3 18 2.6e-05 0.00043 20.1 0.4 1 23 228 251 228 251 0.96 4 18 8.5e-05 0.0014 18.5 1.7 1 23 256 279 256 279 0.94 5 18 0.001 0.016 15.1 1.3 1 23 284 307 284 307 0.94 6 18 0.00016 0.0026 17.6 0.4 1 23 312 335 312 335 0.94 7 18 4.7e-08 7.6e-07 28.7 1.0 1 23 340 363 340 363 0.96 8 18 7.3e-05 0.0012 18.7 1.1 1 23 368 391 368 391 0.94 9 18 1.5e-06 2.5e-05 24.0 1.2 2 23 397 419 397 419 0.95 10 18 0.00017 0.0028 17.5 2.0 1 23 424 447 424 448 0.94 11 18 1.6e-05 0.00026 20.8 0.9 1 23 452 475 452 475 0.94 12 18 2.5e-06 4.1e-05 23.3 0.4 1 23 480 503 480 503 0.94 13 18 2.2e-05 0.00036 20.3 0.7 1 23 508 531 508 531 0.96 14 18 0.00011 0.0018 18.1 1.2 1 23 536 559 536 559 0.94 15 18 3.3e-06 5.4e-05 22.9 2.6 1 23 564 587 564 587 0.93 16 18 7.2e-06 0.00012 21.9 0.3 1 23 592 615 592 615 0.94 17 18 0.00019 0.0032 17.4 0.6 1 23 620 643 620 643 0.94 18 18 0.1 1.7 8.8 0.8 1 14 648 661 648 665 0.85
Sequence Information
- Coding Sequence
- ATGGAATACTGTGGTTTGTTCGATTGTGCAGACAGAGTTAAAGAGGAGCCTAAGGACGTGCTGCCTAATGAGAATGATTGGGATACGATTGACGAAAAACCAGATCTTAAAAACTTCCAACTCTTACCATCTTTGCAAGAAAATACCATCCTTACTCTTCGAAAGTATGCCGAGAATCATGAACGTAAACTCGATGACGAAGTGGAAATAATCGTAGAATGTGAAGATGTCAAGCTTAACATGGATTTAttcaaagtcgaaaaatttgacatcgattttcaaaatctcTTGCAGGGTAGAAAGAATAATGATGGTTGTAAAACCCAAAACGTAGTTAAAATGGAACCCACGGAGGAAGTACAACAGGCATCTTTTGTGAACACCGCAGAAGaatcgaatttgaatttggTCTGTAAACGTGgcgaacaaaataaaacaagaaaaataacaaaagagTTGAACAACGAACGTAACCACAAAAGACACCAAGGTACGATGCATAATGCTAGAACTTACATATGTGAAACATGCGGCAAAAATTTCGCATCTCAGGGCAATCTGAACAAGCATGTCATATCAGTACATAATTATACTACCCACTCATGTGATACATGTGGCAAGAAATTTGCGCAAAAAGGTAATcttaaaatccacatcgattcagtgcacaatggtgtcagaCATGTATGTGACATTTGCGGAAATGTGTTCAAACGAAAACAGcttctcaaaatccacatcgagtCGGTGCATCAAAAAATCAGGcatccatgtaatatatgccAAAATACATTCTCAAAAAGGAGTAGTCTCAGAAAGCACATCGTTTCCGTGCACAACAAAATCAcgcatgcatgtgatatatgccaaaaTACATTCTCAGGCAAGAACAGTcttaaaaaacatattgatTCGATGCATAGTGGtatcacacatgcatgcgaCATTTGCGGAAATGTGTTAAAACGAAAAGatgatctcaaaaaacacatcgattcggttcACAATCGAGTGCGGCATGTATGTGAcatttgtggaaagacattcacacaaaaaagtaatctcaataCTCACATCGAGTCGGTGCATAAGAAAATTACGCATCCATGTGATGCATGCCAAAAGATATTCtcaaaaaagagtaatctcaaaactcacatcgattctgtgcataataaaatcacgaacacatgcgatatatgccaaaagacattctcagatAAGAGTTatctaaaaaaacacatcgattcaaTGCATAATGGTGGCGgacatgcatgcgatatttgcggaaaCATATTCACACAAAGACAACAACTCAAAACCCATATGGATTCCGTGCATCATAAAATCAAGcatccatgtaatatatgcaAAAAGACATTCGCAGAAAAGggttatctcaaaaaacacattaaTGCGATACATAATGGTTattcacatgcatgtgatacaTGTGGCAAGACATTTGCGCAAAAAGGTAATcttaaaatccacatcgattcagtgcacaatggtgtcaaacatgtatgtgatatatgccaaaagataTTCGCAACGAAAGGTAATTATAAAACCCACATCGAATCGGTGCACAACAAAATCAcgcatgcatgtgatatatgccaaaaTATATTCTCAAGCAAAAGCagtcttaaaaaacacatcgattcgatgcatAGTGGTGTCAGACATGCATGCGATTTTTgccaaaagaaattctcagacaagagtaatctcaaaagACACATTAATGCAATGCATAACGGTGattcacatgcatgtgatatttgtggaaaggCATTCACTCTAAAAGGTAATCTtaaaacccacatcgattcggtgcacaatAGAGTCGgacatgcatgcgatatatgccagaagacattaacaaaaaaaggtaatctcaaaattcacatcgattcagttCATAGAAAAATTGCCCATGCGTGCGATACATGCGGCAAGACATTCGCCTCGAAGCAAACTCGCAAAAAGGATTCGGTACATGCCTCGTGTATTGAAattcgataa
- Protein Sequence
- MEYCGLFDCADRVKEEPKDVLPNENDWDTIDEKPDLKNFQLLPSLQENTILTLRKYAENHERKLDDEVEIIVECEDVKLNMDLFKVEKFDIDFQNLLQGRKNNDGCKTQNVVKMEPTEEVQQASFVNTAEESNLNLVCKRGEQNKTRKITKELNNERNHKRHQGTMHNARTYICETCGKNFASQGNLNKHVISVHNYTTHSCDTCGKKFAQKGNLKIHIDSVHNGVRHVCDICGNVFKRKQLLKIHIESVHQKIRHPCNICQNTFSKRSSLRKHIVSVHNKITHACDICQNTFSGKNSLKKHIDSMHSGITHACDICGNVLKRKDDLKKHIDSVHNRVRHVCDICGKTFTQKSNLNTHIESVHKKITHPCDACQKIFSKKSNLKTHIDSVHNKITNTCDICQKTFSDKSYLKKHIDSMHNGGGHACDICGNIFTQRQQLKTHMDSVHHKIKHPCNICKKTFAEKGYLKKHINAIHNGYSHACDTCGKTFAQKGNLKIHIDSVHNGVKHVCDICQKIFATKGNYKTHIESVHNKITHACDICQNIFSSKSSLKKHIDSMHSGVRHACDFCQKKFSDKSNLKRHINAMHNGDSHACDICGKAFTLKGNLKTHIDSVHNRVGHACDICQKTLTKKGNLKIHIDSVHRKIAHACDTCGKTFASKQTRKKDSVHASCIEIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484870;
- 90% Identity
- iTF_01484870;
- 80% Identity
- iTF_01484870;