Tpre002236.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1329048-1332623[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 9e-07 1.5e-05 24.7 0.3 1 23 203 226 203 226 0.93 2 21 3.3e-05 0.00054 19.8 1.2 2 23 233 255 232 255 0.94 3 21 1.5e-06 2.5e-05 24.0 0.2 1 23 262 285 262 285 0.97 4 21 0.0082 0.13 12.2 0.5 1 23 290 313 290 313 0.96 5 21 1.5e-05 0.00024 20.9 0.4 1 23 318 341 318 341 0.98 6 21 1.6e-05 0.00026 20.8 0.6 1 23 348 370 348 370 0.99 7 21 5.3 87 3.4 2.5 3 23 377 395 375 395 0.83 8 21 1.5e-05 0.00024 20.9 0.1 1 23 400 423 400 423 0.96 9 21 0.0009 0.015 15.3 1.7 2 23 429 451 429 451 0.95 10 21 8.5e-05 0.0014 18.5 1.1 1 23 456 479 456 479 0.93 11 21 5.4e-05 0.00089 19.1 1.2 1 23 484 507 484 507 0.92 12 21 6.3e-05 0.001 18.9 2.9 1 23 512 535 512 535 0.92 13 21 0.29 4.7 7.4 0.2 1 23 540 560 540 560 0.82 14 21 1.2e-05 0.0002 21.1 2.1 1 23 565 588 565 588 0.96 15 21 0.014 0.24 11.5 1.4 3 23 595 616 593 616 0.89 16 21 8.5e-06 0.00014 21.6 0.7 2 23 624 646 622 646 0.88 17 21 0.00072 0.012 15.6 0.1 1 23 651 674 651 674 0.96 18 21 1.5e-05 0.00024 20.9 1.5 1 23 679 702 679 702 0.96 19 21 8.1e-07 1.3e-05 24.8 2.9 1 23 707 730 707 730 0.98 20 21 8e-06 0.00013 21.7 0.6 1 23 735 758 735 758 0.97 21 21 4.6e-05 0.00075 19.3 1.2 1 23 763 786 763 786 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCGAACAATATATTTAATGGTGCAGCTatcagCATAAAAAAGGAACCAGAAGATAAGTCATTTGAAGAGTTTGTTAATACTGACGAAAATTCGATCCCTAAGGTTCAGAAATATGCCCTTAATTGTAAAAGTGAACTCGATGAAGAAATAGAAATCGAATTCGAATGTAAAAACGAGAAATCTAGCCTGAATTCATTTGTACGTAAGAAAATTgacgatttttctcaatatcgTTACAAAACACGAAGTAGAATTAAAAGAGAATTTCCTAGTGatagagtgaaaaaagaaaatatacgaAGGAATTCCAATAATTTGGATACGAATGTCGAGTATGAACTTAACAGCGAGATTGAAATCGAATTCGAATGTAAAGAAGAAAAGCCCAACAAGAATATATTAGTAACgcaatgtataaaaaatagcgATGgttgtgaaaaaagaaaaaaacaacgtactagagtaaactcaaaaaaattggataaaaatGTCGAGTGTGAAATTCGTGATATAAAAACTACAACAAAATTCAGATCACGAAATAAAAGAATGCAAAAAGATGCGCACATTGACGAAGCGCAAAACAGTACTAGCATTGGTCAtgcttgtgacaagtgtggAAAGGTGTTTTCTAATGCGAGCAATCTTAAACTGCACATCGAGTGGGTGCATGATAAATTAATCGCGCTCACGTGTGATACGTGTGGAAAGACTTTTGCACGTAAGGGTGACGTCAAAAAACACATCCTACATCTCCATAATGATGGTAAGATCACCTACTCGTGTCCTACGTGTGGAAAGACGTACCCACAACCGACCAGTCTCAAAAGCCACATCAACTCGGTGCACAAAAAAGTTACTTATGCATGCGATTTGTGCAGAAAGAATTTCACAACCATAGGTTCTCGTAAAAACCACATCGACACGGAGCACAATTGTATGACCtacgaatgtgatatttgcaacAAGGTATACCTACGTCAAACTTCTCTCAAAAGGCACATCAGGGTGGCGCATAGTAAAAGTAATATGAAGTATGAATGTAATGAATGTGGAAAGAAGTTTGCATCCAAGGAAGTTATCAAATCTCACATGAAATCGCACAACGGCGTGAAGCAGCCTTGCAAtatatgtggaaaaaaattgttacatctCAATATTCACATGAATGTGGTGCACAGTGTTACCTTGTATACATGCGATGTATGCGGTAAGACGTTCAAAAGGAAAGGTGCTATCGCAGCCCACATCGACGTGAAACACAATGGCAACGCTCCTAAGTGTGGAATATGCGGTAAAACGTTTGCAAAAAAGAGTTGCGTCAAAGTCCACGTCGATAAGTTGCATAAGAAAATTACATATTCATGCGATACGTGCAGAAAGAAGTTCAAAAGCAAAGAATATCTGAAAGTTCATATCGATGCAGAgcataatggtatcactcACACCTGTGGTACGTGCGGAAAGACGTTCGGTTACAAGCAAAATCTCAAAGCTCACATCGATGCGAAGCACAGCGCTCGCGCATTTGAATGCGATGtttgcttcaaaaaattttcagtgaaaagtcatttaaaaaaacacatcgactTTGTGCACAATGGTACCAAACATCCGTGCGACATATGTGGAAAAACAGTAGTAGATCTCCAAGACCACATCAATCGGGTGcacaataataaattctaCACATGTAACGACTGTGGTAAGACATTTACCCGTAAATGTCGTCTACTTGACCACATCAATGGTATTCATATTGGTAACACTCATAAATGCATTGCATGTGGAAAGGAATTTAGTCTTAAGGAAAAATTCCAAGCTCACCTCAAAACGGCGCATAATTTAAACTCCAAAAAATGtccatgcgataaatgcgggAAGATATATACATCTAAGGCAAACCTTCAACGACACATCGCTGATGTGCATGAAAAAACCACttacgcatgcgatatatgTGGAAACACATTTACCCTCGAGGAAAGACTTAAAAGGCACATCATTAAGATACACATGATTATTAGGCATCCATGCGACGtatgtggaaagaaatttacTGACAAGAGTAAACTCGACGAGCACCTTAAATCATCGCATCGTGGTAAAATTTATACGTGTGATAAGTGcggaaaagttttttcacaAAAGTGTAATCTGAATGAGCACGTTAGATCATCGCATAAAGGTGTTACTTATGCGTGTGTTCAATGCGGggcaaaatttacaaataagaGTTATCTCAAGGTCCACATCAATACCAAGCATAACGGTATCACATTTACATGTGGTTTATGCGGAAAGACATACTCGCAACGAAACAGTCTCATTAAACACGCAAAACAAAAGCATGATGGTGTCATTGTTGTGGCGAAGTAG
- Protein Sequence
- MESNNIFNGAAISIKKEPEDKSFEEFVNTDENSIPKVQKYALNCKSELDEEIEIEFECKNEKSSLNSFVRKKIDDFSQYRYKTRSRIKREFPSDRVKKENIRRNSNNLDTNVEYELNSEIEIEFECKEEKPNKNILVTQCIKNSDGCEKRKKQRTRVNSKKLDKNVECEIRDIKTTTKFRSRNKRMQKDAHIDEAQNSTSIGHACDKCGKVFSNASNLKLHIEWVHDKLIALTCDTCGKTFARKGDVKKHILHLHNDGKITYSCPTCGKTYPQPTSLKSHINSVHKKVTYACDLCRKNFTTIGSRKNHIDTEHNCMTYECDICNKVYLRQTSLKRHIRVAHSKSNMKYECNECGKKFASKEVIKSHMKSHNGVKQPCNICGKKLLHLNIHMNVVHSVTLYTCDVCGKTFKRKGAIAAHIDVKHNGNAPKCGICGKTFAKKSCVKVHVDKLHKKITYSCDTCRKKFKSKEYLKVHIDAEHNGITHTCGTCGKTFGYKQNLKAHIDAKHSARAFECDVCFKKFSVKSHLKKHIDFVHNGTKHPCDICGKTVVDLQDHINRVHNNKFYTCNDCGKTFTRKCRLLDHINGIHIGNTHKCIACGKEFSLKEKFQAHLKTAHNLNSKKCPCDKCGKIYTSKANLQRHIADVHEKTTYACDICGNTFTLEERLKRHIIKIHMIIRHPCDVCGKKFTDKSKLDEHLKSSHRGKIYTCDKCGKVFSQKCNLNEHVRSSHKGVTYACVQCGAKFTNKSYLKVHINTKHNGITFTCGLCGKTYSQRNSLIKHAKQKHDGVIVVAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484934;
- 90% Identity
- iTF_01484934;
- 80% Identity
- iTF_01484934;