Tpre002236.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1329048-1332623[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.027 2 8.0 0.2 19 43 205 226 191 227 0.89 2 19 0.11 8 6.1 0.5 18 39 233 254 228 259 0.85 3 19 0.26 19 4.8 1.0 18 44 263 286 247 286 0.80 4 19 0.0014 0.1 12.1 0.9 18 44 319 342 316 342 0.92 5 19 0.32 24 4.6 1.4 15 30 346 362 342 371 0.70 6 19 1.9 1.4e+02 2.0 1.9 18 26 376 384 362 390 0.80 7 19 0.17 13 5.4 0.4 17 30 400 413 394 426 0.82 8 19 0.091 6.8 6.3 2.3 15 43 426 451 418 452 0.80 9 19 0.0088 0.66 9.5 0.5 18 44 485 508 478 508 0.94 10 19 1.9 1.4e+02 2.1 0.7 18 43 513 535 510 541 0.78 11 19 0.36 27 4.4 1.9 2 43 526 560 522 561 0.81 12 19 0.81 61 3.3 5.6 13 35 561 580 552 593 0.74 13 19 0.03 2.2 7.9 1.0 16 44 592 617 586 617 0.89 14 19 0.0055 0.41 10.2 1.3 14 43 620 646 617 647 0.88 15 19 0.14 10 5.7 0.4 14 43 648 674 644 675 0.86 16 19 0.11 8.3 6.0 0.1 19 44 681 703 676 703 0.94 17 19 0.037 2.7 7.6 2.5 15 44 705 731 703 731 0.90 18 19 0.36 27 4.4 0.7 19 44 737 759 734 759 0.93 19 19 0.0092 0.69 9.5 0.6 18 43 764 786 762 787 0.87
Sequence Information
- Coding Sequence
- ATGGAGTCGAACAATATATTTAATGGTGCAGCTatcagCATAAAAAAGGAACCAGAAGATAAGTCATTTGAAGAGTTTGTTAATACTGACGAAAATTCGATCCCTAAGGTTCAGAAATATGCCCTTAATTGTAAAAGTGAACTCGATGAAGAAATAGAAATCGAATTCGAATGTAAAAACGAGAAATCTAGCCTGAATTCATTTGTACGTAAGAAAATTgacgatttttctcaatatcgTTACAAAACACGAAGTAGAATTAAAAGAGAATTTCCTAGTGatagagtgaaaaaagaaaatatacgaAGGAATTCCAATAATTTGGATACGAATGTCGAGTATGAACTTAACAGCGAGATTGAAATCGAATTCGAATGTAAAGAAGAAAAGCCCAACAAGAATATATTAGTAACgcaatgtataaaaaatagcgATGgttgtgaaaaaagaaaaaaacaacgtactagagtaaactcaaaaaaattggataaaaatGTCGAGTGTGAAATTCGTGATATAAAAACTACAACAAAATTCAGATCACGAAATAAAAGAATGCAAAAAGATGCGCACATTGACGAAGCGCAAAACAGTACTAGCATTGGTCAtgcttgtgacaagtgtggAAAGGTGTTTTCTAATGCGAGCAATCTTAAACTGCACATCGAGTGGGTGCATGATAAATTAATCGCGCTCACGTGTGATACGTGTGGAAAGACTTTTGCACGTAAGGGTGACGTCAAAAAACACATCCTACATCTCCATAATGATGGTAAGATCACCTACTCGTGTCCTACGTGTGGAAAGACGTACCCACAACCGACCAGTCTCAAAAGCCACATCAACTCGGTGCACAAAAAAGTTACTTATGCATGCGATTTGTGCAGAAAGAATTTCACAACCATAGGTTCTCGTAAAAACCACATCGACACGGAGCACAATTGTATGACCtacgaatgtgatatttgcaacAAGGTATACCTACGTCAAACTTCTCTCAAAAGGCACATCAGGGTGGCGCATAGTAAAAGTAATATGAAGTATGAATGTAATGAATGTGGAAAGAAGTTTGCATCCAAGGAAGTTATCAAATCTCACATGAAATCGCACAACGGCGTGAAGCAGCCTTGCAAtatatgtggaaaaaaattgttacatctCAATATTCACATGAATGTGGTGCACAGTGTTACCTTGTATACATGCGATGTATGCGGTAAGACGTTCAAAAGGAAAGGTGCTATCGCAGCCCACATCGACGTGAAACACAATGGCAACGCTCCTAAGTGTGGAATATGCGGTAAAACGTTTGCAAAAAAGAGTTGCGTCAAAGTCCACGTCGATAAGTTGCATAAGAAAATTACATATTCATGCGATACGTGCAGAAAGAAGTTCAAAAGCAAAGAATATCTGAAAGTTCATATCGATGCAGAgcataatggtatcactcACACCTGTGGTACGTGCGGAAAGACGTTCGGTTACAAGCAAAATCTCAAAGCTCACATCGATGCGAAGCACAGCGCTCGCGCATTTGAATGCGATGtttgcttcaaaaaattttcagtgaaaagtcatttaaaaaaacacatcgactTTGTGCACAATGGTACCAAACATCCGTGCGACATATGTGGAAAAACAGTAGTAGATCTCCAAGACCACATCAATCGGGTGcacaataataaattctaCACATGTAACGACTGTGGTAAGACATTTACCCGTAAATGTCGTCTACTTGACCACATCAATGGTATTCATATTGGTAACACTCATAAATGCATTGCATGTGGAAAGGAATTTAGTCTTAAGGAAAAATTCCAAGCTCACCTCAAAACGGCGCATAATTTAAACTCCAAAAAATGtccatgcgataaatgcgggAAGATATATACATCTAAGGCAAACCTTCAACGACACATCGCTGATGTGCATGAAAAAACCACttacgcatgcgatatatgTGGAAACACATTTACCCTCGAGGAAAGACTTAAAAGGCACATCATTAAGATACACATGATTATTAGGCATCCATGCGACGtatgtggaaagaaatttacTGACAAGAGTAAACTCGACGAGCACCTTAAATCATCGCATCGTGGTAAAATTTATACGTGTGATAAGTGcggaaaagttttttcacaAAAGTGTAATCTGAATGAGCACGTTAGATCATCGCATAAAGGTGTTACTTATGCGTGTGTTCAATGCGGggcaaaatttacaaataagaGTTATCTCAAGGTCCACATCAATACCAAGCATAACGGTATCACATTTACATGTGGTTTATGCGGAAAGACATACTCGCAACGAAACAGTCTCATTAAACACGCAAAACAAAAGCATGATGGTGTCATTGTTGTGGCGAAGTAG
- Protein Sequence
- MESNNIFNGAAISIKKEPEDKSFEEFVNTDENSIPKVQKYALNCKSELDEEIEIEFECKNEKSSLNSFVRKKIDDFSQYRYKTRSRIKREFPSDRVKKENIRRNSNNLDTNVEYELNSEIEIEFECKEEKPNKNILVTQCIKNSDGCEKRKKQRTRVNSKKLDKNVECEIRDIKTTTKFRSRNKRMQKDAHIDEAQNSTSIGHACDKCGKVFSNASNLKLHIEWVHDKLIALTCDTCGKTFARKGDVKKHILHLHNDGKITYSCPTCGKTYPQPTSLKSHINSVHKKVTYACDLCRKNFTTIGSRKNHIDTEHNCMTYECDICNKVYLRQTSLKRHIRVAHSKSNMKYECNECGKKFASKEVIKSHMKSHNGVKQPCNICGKKLLHLNIHMNVVHSVTLYTCDVCGKTFKRKGAIAAHIDVKHNGNAPKCGICGKTFAKKSCVKVHVDKLHKKITYSCDTCRKKFKSKEYLKVHIDAEHNGITHTCGTCGKTFGYKQNLKAHIDAKHSARAFECDVCFKKFSVKSHLKKHIDFVHNGTKHPCDICGKTVVDLQDHINRVHNNKFYTCNDCGKTFTRKCRLLDHINGIHIGNTHKCIACGKEFSLKEKFQAHLKTAHNLNSKKCPCDKCGKIYTSKANLQRHIADVHEKTTYACDICGNTFTLEERLKRHIIKIHMIIRHPCDVCGKKFTDKSKLDEHLKSSHRGKIYTCDKCGKVFSQKCNLNEHVRSSHKGVTYACVQCGAKFTNKSYLKVHINTKHNGITFTCGLCGKTYSQRNSLIKHAKQKHDGVIVVAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481707; iTF_01485048;
- 90% Identity
- iTF_01485048;
- 80% Identity
- iTF_01485048;