Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1166679-1169092[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 3.1e-05 0.00051 19.9 3.2 1 23 168 191 168 191 0.96

2 16 3.6e-06 6e-05 22.8 0.7 1 23 196 219 196 219 0.94

3 16 6.2e-08 1e-06 28.4 1.4 1 23 224 247 224 247 0.95

4 16 7.3e-06 0.00012 21.8 4.9 1 23 252 275 252 275 0.97

5 16 6.5e-08 1.1e-06 28.3 1.8 1 23 280 303 280 303 0.97

6 16 1.1e-07 1.7e-06 27.6 2.0 1 23 308 331 308 331 0.96

7 16 9.4e-06 0.00015 21.5 3.3 1 23 336 359 336 359 0.96

8 16 1.5e-08 2.5e-07 30.3 0.9 1 23 364 387 364 387 0.97

9 16 8.8e-07 1.4e-05 24.7 1.7 1 23 392 415 392 415 0.94

10 16 7.3e-08 1.2e-06 28.1 2.0 1 23 420 443 420 443 0.97

11 16 1.2e-06 2e-05 24.3 0.9 1 23 448 471 448 471 0.96

12 16 9.3e-06 0.00015 21.5 0.5 2 23 477 499 476 499 0.95

13 16 3.3e-06 5.5e-05 22.9 3.1 1 23 504 527 504 527 0.96

14 16 3.8e-05 0.00062 19.6 0.7 1 23 532 555 532 555 0.96

15 16 0.00039 0.0064 16.4 0.3 1 23 561 584 561 584 0.93

16 16 8.2e-06 0.00013 21.7 2.9 1 23 589 612 589 612 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	3.1e-05	0.00051	19.9	3.2	1	23	168	191	168	191	0.96
2	16	3.6e-06	6e-05	22.8	0.7	1	23	196	219	196	219	0.94
3	16	6.2e-08	1e-06	28.4	1.4	1	23	224	247	224	247	0.95
4	16	7.3e-06	0.00012	21.8	4.9	1	23	252	275	252	275	0.97
5	16	6.5e-08	1.1e-06	28.3	1.8	1	23	280	303	280	303	0.97
6	16	1.1e-07	1.7e-06	27.6	2.0	1	23	308	331	308	331	0.96
7	16	9.4e-06	0.00015	21.5	3.3	1	23	336	359	336	359	0.96
8	16	1.5e-08	2.5e-07	30.3	0.9	1	23	364	387	364	387	0.97
9	16	8.8e-07	1.4e-05	24.7	1.7	1	23	392	415	392	415	0.94
10	16	7.3e-08	1.2e-06	28.1	2.0	1	23	420	443	420	443	0.97
11	16	1.2e-06	2e-05	24.3	0.9	1	23	448	471	448	471	0.96
12	16	9.3e-06	0.00015	21.5	0.5	2	23	477	499	476	499	0.95
13	16	3.3e-06	5.5e-05	22.9	3.1	1	23	504	527	504	527	0.96
14	16	3.8e-05	0.00062	19.6	0.7	1	23	532	555	532	555	0.96
15	16	0.00039	0.0064	16.4	0.3	1	23	561	584	561	584	0.93
16	16	8.2e-06	0.00013	21.7	2.9	1	23	589	612	589	612	0.96

Sequence Information

Coding Sequence: ATGAATTCGAGTGGTGTATTTAACAGTGCTGttagagTCAAAAGAGAGCCCTGTGATGAGCTGCTTACCGAAACTGATTATAAGGCAATTGATAAGATTCTCGATACTGAAAAAGTTCAATGCTCGAGATTTCTACAAGAAAATCCAATCAAAATGCTTCAAGAATATGACGAAAATCATGAACGTGAGTTTAATGATGATATAGAGATAGTTATAGAATGCGAAGACGTAAAGCCCAGTATGGATTTATTagtagttaaaaaaatcgacgattATCCTTCAAATCACTTGCAGGATGTGAAATGTAGTTTTGATTACAAAACTAATGATAGAATTAAAATAGAACCCGTGGATGAAGTGAAACaggaatttttcgacgaaGAAGCAACGAAATTGAGTTTCGGTCGTGGACTCggcgaacaaaatgaaaaaattacggaaaagtttaataacaaaaataggCTCAAAGCACACGCCAGCTCGGCTCGCGAAGATAAAAGTCATTCGTGTAAAATATGCAGAAAGAAATTTGCAAGTAAGCCTAATTTGAATAGACATGTCAAATCATCGCATAATCACATCACCCACGCATGTGATGTATGCGACAAGACATTTTCACGAAAaggttatctcaaaatccacatcgattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacgaaatagtcatctcaaaatccacgtagattcagtacataatagTCTCTCTTATAAATGCGATACATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACATCGAATCAGCACATAATGGTCTCACTTATAAATGCGATATATGcggcaagaaattttcacgaaaaggTCATCTCAAGACCCACATCGAATCAGCACACAATGGTCTCACTTATAAATGCGATATATGcggcaagaaattttcacgaaaaggTCATCTCAAgacccacatcgattcagtacataatggtctCACTTATGAATGCGATACATGCGGCAAGTCGTATACTTATAAACatcatctcaaaatccacatcgattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacaaaaaagtaatctcaaaatgCACGTAAATTCAATACACAATCgtgtcacacatgcatgcgatgtatgcggcaagacattttcacaaaaaggtCATCTCAAGACCCACATCGAATCAGCACATAATGGTCTCACTTATAAATGCGATATATGcggcaagaaattttcacgaaaaggTCATCTCAAGACCCACATCGaatcagtacataatggtctTACTTAtaaatgtgatatatgcggcaagtcgtatacttataaaaattctctcaagactcacatcgattcagtacataatggtctGACAAATAAATGCGGTAtatgcggcaagacattttcacgaAAAGATAGTATCAAgacccacatcgattcagtacataatggtctGACATATAAATGCGGTATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAgatccacatcgattcagtgcataatggtcTCACTTATAAatgcgatatatgcggaaGTAGGTACTCCAAAAAGGGttatcttaaaaaacacatcgattcggcCCATAATGGTATTAATACGCATGCATGTGgcatatgcggaaagaaatcgATAAATAAGAGCGTTCTCAAGAAGCACATCAATgcggtgcataataaaatcactcacccatgtgatatatgcgaaaagaagttcTCATTTAAAAGTAATCTTTACAAACATATAAATTCAACGCACCtcttaaaaaaagtcattttcacaaaattttaa
Protein Sequence: MNSSGVFNSAVRVKREPCDELLTETDYKAIDKILDTEKVQCSRFLQENPIKMLQEYDENHEREFNDDIEIVIECEDVKPSMDLLVVKKIDDYPSNHLQDVKCSFDYKTNDRIKIEPVDEVKQEFFDEEATKLSFGRGLGEQNEKITEKFNNKNRLKAHASSAREDKSHSCKICRKKFASKPNLNRHVKSSHNHITHACDVCDKTFSRKGYLKIHIDSVHNGLTYKCDICGKTFSRNSHLKIHVDSVHNSLSYKCDTCGKSYTYKHHLKTHIESAHNGLTYKCDICGKKFSRKGHLKTHIESAHNGLTYKCDICGKKFSRKGHLKTHIDSVHNGLTYECDTCGKSYTYKHHLKIHIDSVHNGLTYKCDICGKTFSQKSNLKMHVNSIHNRVTHACDVCGKTFSQKGHLKTHIESAHNGLTYKCDICGKKFSRKGHLKTHIESVHNGLTYKCDICGKSYTYKNSLKTHIDSVHNGLTNKCGICGKTFSRKDSIKTHIDSVHNGLTYKCGICGKSYTYKHHLKIHIDSVHNGLTYKCDICGSRYSKKGYLKKHIDSAHNGINTHACGICGKKSINKSVLKKHINAVHNKITHPCDICEKKFSFKSNLYKHINSTHLLKKVIFTKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484869;
90% Identity: iTF_01484869;
80% Identity: iTF_01484869;