Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1166679-1169092[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0031 0.23 11.0 3.9 6 44 158 192 153 192 0.83

2 16 0.66 49 3.5 0.1 19 41 198 217 195 221 0.72

3 16 0.0084 0.63 9.6 1.0 18 43 225 247 220 248 0.85

4 16 0.042 3.1 7.4 5.4 15 44 250 276 242 276 0.88

5 16 0.001 0.077 12.5 1.8 18 44 281 304 279 304 0.91

6 16 0.003 0.22 11.1 1.3 18 43 309 331 306 332 0.86

7 16 0.33 25 4.5 2.0 18 43 337 359 334 360 0.87

8 16 0.00055 0.041 13.4 1.0 18 44 365 388 362 388 0.93

9 16 0.057 4.2 7.0 1.3 19 44 394 416 391 416 0.90

10 16 0.0019 0.14 11.7 1.6 18 44 421 444 418 444 0.89

11 16 0.0015 0.11 12.0 0.7 18 44 449 472 446 472 0.91

12 16 0.0012 0.086 12.4 0.8 17 43 476 499 474 500 0.77

13 16 0.023 1.7 8.2 2.6 18 43 505 527 501 528 0.87

14 16 0.17 13 5.4 0.6 18 44 533 556 530 556 0.89

15 16 0.58 43 3.7 1.7 19 44 563 585 559 589 0.88

16 16 0.006 0.45 10.1 2.6 8 43 581 612 574 613 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0031	0.23	11.0	3.9	6	44	158	192	153	192	0.83
2	16	0.66	49	3.5	0.1	19	41	198	217	195	221	0.72
3	16	0.0084	0.63	9.6	1.0	18	43	225	247	220	248	0.85
4	16	0.042	3.1	7.4	5.4	15	44	250	276	242	276	0.88
5	16	0.001	0.077	12.5	1.8	18	44	281	304	279	304	0.91
6	16	0.003	0.22	11.1	1.3	18	43	309	331	306	332	0.86
7	16	0.33	25	4.5	2.0	18	43	337	359	334	360	0.87
8	16	0.00055	0.041	13.4	1.0	18	44	365	388	362	388	0.93
9	16	0.057	4.2	7.0	1.3	19	44	394	416	391	416	0.90
10	16	0.0019	0.14	11.7	1.6	18	44	421	444	418	444	0.89
11	16	0.0015	0.11	12.0	0.7	18	44	449	472	446	472	0.91
12	16	0.0012	0.086	12.4	0.8	17	43	476	499	474	500	0.77
13	16	0.023	1.7	8.2	2.6	18	43	505	527	501	528	0.87
14	16	0.17	13	5.4	0.6	18	44	533	556	530	556	0.89
15	16	0.58	43	3.7	1.7	19	44	563	585	559	589	0.88
16	16	0.006	0.45	10.1	2.6	8	43	581	612	574	613	0.77

Sequence Information

Coding Sequence: ATGAATTCGAGTGGTGTATTTAACAGTGCTGttagagTCAAAAGAGAGCCCTGTGATGAGCTGCTTACCGAAACTGATTATAAGGCAATTGATAAGATTCTCGATACTGAAAAAGTTCAATGCTCGAGATTTCTACAAGAAAATCCAATCAAAATGCTTCAAGAATATGACGAAAATCATGAACGTGAGTTTAATGATGATATAGAGATAGTTATAGAATGCGAAGACGTAAAGCCCAGTATGGATTTATTagtagttaaaaaaatcgacgattATCCTTCAAATCACTTGCAGGATGTGAAATGTAGTTTTGATTACAAAACTAATGATAGAATTAAAATAGAACCCGTGGATGAAGTGAAACaggaatttttcgacgaaGAAGCAACGAAATTGAGTTTCGGTCGTGGACTCggcgaacaaaatgaaaaaattacggaaaagtttaataacaaaaataggCTCAAAGCACACGCCAGCTCGGCTCGCGAAGATAAAAGTCATTCGTGTAAAATATGCAGAAAGAAATTTGCAAGTAAGCCTAATTTGAATAGACATGTCAAATCATCGCATAATCACATCACCCACGCATGTGATGTATGCGACAAGACATTTTCACGAAAaggttatctcaaaatccacatcgattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacgaaatagtcatctcaaaatccacgtagattcagtacataatagTCTCTCTTATAAATGCGATACATGCGGCAAGTCGTATACTTATAAACATCATCTCAAGACCCACATCGAATCAGCACATAATGGTCTCACTTATAAATGCGATATATGcggcaagaaattttcacgaaaaggTCATCTCAAGACCCACATCGAATCAGCACACAATGGTCTCACTTATAAATGCGATATATGcggcaagaaattttcacgaaaaggTCATCTCAAgacccacatcgattcagtacataatggtctCACTTATGAATGCGATACATGCGGCAAGTCGTATACTTATAAACatcatctcaaaatccacatcgattcagtacataatggtctCACTTATAAATGCGATAtatgcggcaagacattttcacaaaaaagtaatctcaaaatgCACGTAAATTCAATACACAATCgtgtcacacatgcatgcgatgtatgcggcaagacattttcacaaaaaggtCATCTCAAGACCCACATCGAATCAGCACATAATGGTCTCACTTATAAATGCGATATATGcggcaagaaattttcacgaaaaggTCATCTCAAGACCCACATCGaatcagtacataatggtctTACTTAtaaatgtgatatatgcggcaagtcgtatacttataaaaattctctcaagactcacatcgattcagtacataatggtctGACAAATAAATGCGGTAtatgcggcaagacattttcacgaAAAGATAGTATCAAgacccacatcgattcagtacataatggtctGACATATAAATGCGGTATATGCGGCAAGTCGTATACTTATAAACATCATCTCAAgatccacatcgattcagtgcataatggtcTCACTTATAAatgcgatatatgcggaaGTAGGTACTCCAAAAAGGGttatcttaaaaaacacatcgattcggcCCATAATGGTATTAATACGCATGCATGTGgcatatgcggaaagaaatcgATAAATAAGAGCGTTCTCAAGAAGCACATCAATgcggtgcataataaaatcactcacccatgtgatatatgcgaaaagaagttcTCATTTAAAAGTAATCTTTACAAACATATAAATTCAACGCACCtcttaaaaaaagtcattttcacaaaattttaa
Protein Sequence: MNSSGVFNSAVRVKREPCDELLTETDYKAIDKILDTEKVQCSRFLQENPIKMLQEYDENHEREFNDDIEIVIECEDVKPSMDLLVVKKIDDYPSNHLQDVKCSFDYKTNDRIKIEPVDEVKQEFFDEEATKLSFGRGLGEQNEKITEKFNNKNRLKAHASSAREDKSHSCKICRKKFASKPNLNRHVKSSHNHITHACDVCDKTFSRKGYLKIHIDSVHNGLTYKCDICGKTFSRNSHLKIHVDSVHNSLSYKCDTCGKSYTYKHHLKTHIESAHNGLTYKCDICGKKFSRKGHLKTHIESAHNGLTYKCDICGKKFSRKGHLKTHIDSVHNGLTYECDTCGKSYTYKHHLKIHIDSVHNGLTYKCDICGKTFSQKSNLKMHVNSIHNRVTHACDVCGKTFSQKGHLKTHIESAHNGLTYKCDICGKKFSRKGHLKTHIESVHNGLTYKCDICGKSYTYKNSLKTHIDSVHNGLTNKCGICGKTFSRKDSIKTHIDSVHNGLTYKCGICGKSYTYKHHLKIHIDSVHNGLTYKCDICGSRYSKKGYLKKHIDSAHNGINTHACGICGKKSINKSVLKKHINAVHNKITHPCDICEKKFSFKSNLYKHINSTHLLKKVIFTKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01485044;
90% Identity: iTF_01485044;
80% Identity: iTF_01485044;