Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:160895-164004[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.1e-07 6.7e-06 25.8 0.7 1 23 159 182 159 182 0.92

2 17 7.2e-06 0.00012 21.9 0.8 1 23 187 210 187 210 0.96

3 17 4.7e-07 7.7e-06 25.6 0.5 1 23 215 238 215 238 0.95

4 17 1.9e-06 3.2e-05 23.6 0.7 1 23 243 266 243 266 0.96

5 17 4.7e-07 7.7e-06 25.6 0.5 1 23 271 294 271 294 0.95

6 17 5e-07 8.2e-06 25.5 1.8 1 23 299 321 299 321 0.95

7 17 3.1e-05 0.00051 19.9 0.3 1 23 326 349 326 349 0.95

8 17 2.9e-08 4.8e-07 29.4 1.1 1 23 354 377 354 377 0.95

9 17 2.2e-07 3.7e-06 26.6 0.3 1 23 382 405 382 405 0.97

10 17 1.4e-06 2.2e-05 24.1 2.3 1 23 410 433 410 433 0.95

11 17 0.00019 0.003 17.4 2.4 1 23 438 461 438 461 0.95

12 17 0.00014 0.0022 17.8 4.0 1 23 466 489 466 489 0.95

13 17 7.3e-06 0.00012 21.8 2.4 1 23 494 517 494 517 0.97

14 17 2.8e-06 4.6e-05 23.1 0.7 1 23 522 545 522 545 0.95

15 17 0.00019 0.0031 17.4 2.0 1 23 550 573 550 573 0.92

16 17 5.8e-06 9.5e-05 22.1 0.6 3 23 580 601 579 601 0.97

17 17 0.00021 0.0034 17.2 1.2 1 23 606 629 606 629 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.1e-07	6.7e-06	25.8	0.7	1	23	159	182	159	182	0.92
2	17	7.2e-06	0.00012	21.9	0.8	1	23	187	210	187	210	0.96
3	17	4.7e-07	7.7e-06	25.6	0.5	1	23	215	238	215	238	0.95
4	17	1.9e-06	3.2e-05	23.6	0.7	1	23	243	266	243	266	0.96
5	17	4.7e-07	7.7e-06	25.6	0.5	1	23	271	294	271	294	0.95
6	17	5e-07	8.2e-06	25.5	1.8	1	23	299	321	299	321	0.95
7	17	3.1e-05	0.00051	19.9	0.3	1	23	326	349	326	349	0.95
8	17	2.9e-08	4.8e-07	29.4	1.1	1	23	354	377	354	377	0.95
9	17	2.2e-07	3.7e-06	26.6	0.3	1	23	382	405	382	405	0.97
10	17	1.4e-06	2.2e-05	24.1	2.3	1	23	410	433	410	433	0.95
11	17	0.00019	0.003	17.4	2.4	1	23	438	461	438	461	0.95
12	17	0.00014	0.0022	17.8	4.0	1	23	466	489	466	489	0.95
13	17	7.3e-06	0.00012	21.8	2.4	1	23	494	517	494	517	0.97
14	17	2.8e-06	4.6e-05	23.1	0.7	1	23	522	545	522	545	0.95
15	17	0.00019	0.0031	17.4	2.0	1	23	550	573	550	573	0.92
16	17	5.8e-06	9.5e-05	22.1	0.6	3	23	580	601	579	601	0.97
17	17	0.00021	0.0034	17.2	1.2	1	23	606	629	606	629	0.95

Sequence Information

Coding Sequence: ATGGAATCGAGTGATATGCTTAATTGTGCTGTGAgAGTGAAGGAGGAAACGATTGATGTCTCATTTCTTGAAAATGAATGTGAAATGATTGACGAGAAACCCGATGTCAAAAACATCCAACTTTTACCATTTTCGTTGGAAAAACCAGCTCACAAACTTCGGGAATATGACGAAAATCAAGAAACTGATATAAATGACGAAATGGAGATTGAATTCGAGTGTGTAGACGTCAAGCTCACTATGGATTTAttggtaaataataaatccGATGAATATTCTCGAAATCACTTACAGCTTACGAAATATAGCAAGGATTATcagaatcaaaataaaattaaagaggAAACTGTGGcggaagtgaaaaaagaagtgaatttgaattttgattatgAACTTAACgggagaaatgaaaaaatgaatgacaTTGAAAAGTTGAAAGATGGACTCGAAATAAGAACCGAAAAGGTACATAGACATGAGTGtaatatttgcggaaagacatttccaaaaaaaagtaatcttaaAACACACATTGATGCGGCGCACAATGGTACCACCCATACCTGTGATACGTGTGGTAAGACATTTGCACGACTGGATGTTCTCAAACGCCACATCCTTTCGGTACATGATAAAATCTGtcatgaatgtgatatttgcggaaagaagtACTCAGATAAGGGTAatctcaagaaacacatcgaTGTAGCGCACAATGGTATCATCCATAGCTGTAAGACATGTGGTAAGACATTTGCACAAATAGGTAATCTCATACGCCACATCAATTCGGTACATGACAGAATTACtcatgaatgtgatatttgcggaaagaagtACTCAGATAAGGGTAatctcaagaaacacatcgaTGTAGCGCACAATGGTGTTAGACATGAGTGtaatatttgcggaaagacattttcaaaaaaaagtagtctTAAAACACACATTGATGCACACAATGGTATTGCCTTTATTTGTAGGACATGTGGTAAGACATTTGCACAACTAATTACTCTCAAAcgccacatcgattcagtacatGACAAAATCACACATGAATGCaatatttgcggaaaaaaattctcagacaagagtaatctcaagaaacacatcgaTGTGGCGCACAATAATGTCACCTATACTTGTGAtgtgtgcgaaaaaaaattctcgacgaATAGTAATCTCAACGAACACATCAATGTAGCGCACAATGGTGTTAGacatgaatgtgatatttgcggcaaGTCCTTTACTCACAAAGGTtatctcaaaacccacatcgattcggtacataataaaatcattcatgaatgtgatatttgcggaaagaaatgcTTAACTAAGAGTAACCTTAAATCACACATGGATGTGGCGCACAATGGTATCAGACATGAATGTAATAGCTGCACAAAGAAATACTCGCATAAGAGTgatctcaagaaacacatcgaTGTGGCGCACAATGGTATCACCCATAGATGTAAGACATGTGGTAAGACATTTGCACGACTTTATGTTCTCAAACGCCATATCAATTCGGTACATGACAAAAACACTCATGAATGTGAAatatgcgagaagaaatacTCAGATAAGAGTGatctaaaaaaacacatcgatgtgGCGCACAATGGTGTTAGACATGCATGTAGTATTTGCAGAAAGacatattcaaaaaaaagttatcttaACACACACATTGATAATGCGCACAATGGTATTGCCCCTATTTGTAAGACATGTGGTAAGACATTTGTACGACTAGATGTTCTCAAACGCCATATGAATTCGGTACATGACAAAGTCACtcatgaatgtgatatttgcggaaagaaattcttatataaaataaatctcaaaaaacacattgatTCGGTACATGATAAAGTAGCgtag
Protein Sequence: MESSDMLNCAVRVKEETIDVSFLENECEMIDEKPDVKNIQLLPFSLEKPAHKLREYDENQETDINDEMEIEFECVDVKLTMDLLVNNKSDEYSRNHLQLTKYSKDYQNQNKIKEETVAEVKKEVNLNFDYELNGRNEKMNDIEKLKDGLEIRTEKVHRHECNICGKTFPKKSNLKTHIDAAHNGTTHTCDTCGKTFARLDVLKRHILSVHDKICHECDICGKKYSDKGNLKKHIDVAHNGIIHSCKTCGKTFAQIGNLIRHINSVHDRITHECDICGKKYSDKGNLKKHIDVAHNGVRHECNICGKTFSKKSSLKTHIDAHNGIAFICRTCGKTFAQLITLKRHIDSVHDKITHECNICGKKFSDKSNLKKHIDVAHNNVTYTCDVCEKKFSTNSNLNEHINVAHNGVRHECDICGKSFTHKGYLKTHIDSVHNKIIHECDICGKKCLTKSNLKSHMDVAHNGIRHECNSCTKKYSHKSDLKKHIDVAHNGITHRCKTCGKTFARLYVLKRHINSVHDKNTHECEICEKKYSDKSDLKKHIDVAHNGVRHACSICRKTYSKKSYLNTHIDNAHNGIAPICKTCGKTFVRLDVLKRHMNSVHDKVTHECDICGKKFLYKINLKKHIDSVHDKVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484867;
90% Identity: iTF_01484867;
80% Identity: iTF_01484867;