Tpre003652.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:242287-244997[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2e-06 3.6e-05 23.5 0.3 1 23 171 194 171 194 0.96 2 18 1.2e-05 0.00019 21.2 0.8 1 23 199 222 199 222 0.93 3 18 2.4e-06 3.9e-05 23.4 0.9 2 23 228 250 228 250 0.96 4 18 1.2e-06 2e-05 24.3 2.0 1 23 256 279 256 279 0.95 5 18 5.1e-05 0.00084 19.2 0.1 3 23 286 307 285 307 0.94 6 18 2.1e-07 3.5e-06 26.7 0.4 2 23 313 335 313 335 0.95 7 18 1.2e-06 2e-05 24.3 2.0 1 23 341 364 341 364 0.95 8 18 0.00051 0.0083 16.0 0.2 3 23 371 392 370 392 0.94 9 18 1e-06 1.7e-05 24.5 0.3 2 23 398 420 398 420 0.95 10 18 7.7e-07 1.3e-05 24.9 0.8 1 23 426 449 426 449 0.97 11 18 9.3e-07 1.5e-05 24.7 0.9 1 23 454 477 454 477 0.96 12 18 3e-05 0.00049 19.9 0.1 2 23 483 505 482 505 0.93 13 18 2.4e-07 3.9e-06 26.5 0.5 2 23 511 533 511 533 0.95 14 18 1.2e-06 2e-05 24.3 2.0 1 23 539 562 539 562 0.95 15 18 0.00051 0.0083 16.0 0.2 3 23 569 590 568 590 0.94 16 18 6.3e-07 1e-05 25.2 0.3 2 23 596 618 596 618 0.95 17 18 0.0034 0.056 13.4 2.9 1 22 624 645 624 647 0.90 18 18 0.001 0.017 15.1 4.0 1 23 652 675 652 675 0.95
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGGAACGTTGAACTGTGCTGttcgcGTGAAAGAAGAACCAATCGACGTGTTGCTCGGTGAAAATGATTACATTGTAATTGACAAGACAGCCGAtgtcaacaattttcaattcctCAGGCATTCGCATGAAAATCGAatTCATATGCTTCAAAAATCTGACGAAAATCACGAAAGTCAACATGACGACTTGGCGATCGAGTTGGAATGTAAAGACATGAAGCCGAGCTTGGATTTATTAGcagttatgaaaattgaaaattgttctgAAGATCACTTGGCAGCTATTGAAAATGGTAACGAATATCAAACTCAAAACATTAAATTAGAACCTTTGGATGCAGTAAAAAAGGAATCTTTTGTGGACGACGCCAATCAATTTAATATGAACTCAAACTGTGAACTCAGCAAGCCAAAGAATAGAAGAACAGttatgaaaaagttgaattataatcataatatcaaaaaacacATTGTGGACATGCCAAATGGAAAAATCGCTTATCCTTGTGATACATGTGGAAAGGCATTTAGACAACGAAAAAGTCTCAAAGTCCATATCGACTCGGTGCATCTTAAAATCACCCACAGTTGTGACttatgtggaaagacattctcagTTAAAAGTTACCTCAAAATGCATATTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCCAAAAAACGTTCTCTCAAATGAGTAATCTTCGCAGCCACATCAACTCAGTTCATAATGGTACAATCACCCATTCTTGTGATAcatgtggaaagtcattcGGACGTAAGAGTAATCTTAAAaatcacatcgattcgatgcatCTTAAAATCACTCATGGCTGTGACttatgtggaaagacattctcagTTAAAAGTTACCTCAAAATGCATATTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCGGAAAGACGTTCTCTCAAAAGGGTAATCTCCAAACCCACATCAACTTAGTGCATGATTGTAAAATCACCCATTCTTGTGATAcatgtggaaagtcattcGGACGTAAGAGTAATCTTAAAaatcacatcgattcgatgcatCTTAAAATCACTCATGGCTGtgacttatgtgaaaagtcaTTCTCACTTAAAGGTTATCTCAAGAAACATATTGAAGCGATACATAATGGTAAAACTCccacatgtgatatttgcggaaagacgtTCTCTCAAAAGGGTAGTCTCCaaacccacatcgattcagtgcataatagAATGAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCCCGAAAGGGCACTCTGAAAATTCATACCAATTCCATGCATAAAGGTACCACCTACCCATGCGATttttgcggaaagacattttctcaaaaaagttatttgaaaTATCATATCGATTCGGCACATAACAGTATCAGACAAGAATGTGATAcatgtggaaagtcattcTCAGCTAAAAGTTACCTCAAAATACATATTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCGGAAAGACGTTCTCTCAAAAGGGTAATCTCCAAACCCACATCAACTTGATGCATGATTGTAAAATCGCCCATTCTTGTGATAcatgtggaaagtcattcGGACGTAAGAGTAATCTTAAAaatcacatcgattcgatgcatCTTAAAATCACTCATGGCTGtgacttatgtgaaaagtcaTTCTCACTTAAAGGTTATCTCAAGAAACATATTGAAGCGATACATAATGGTAAAACTCccacatgtgatatttgcggaaagacgtTCTCTCAAAAGGGTAGTCTCCAAACCCACATCAACTTGGTtcataatagtaaaaaaagttatgaatgtGATGCCTGTGGCAAGAAATTTTTCCGAAAGGATCGTTTGAAACATCATACCGATTTCGCACATAATGGCATCACCTTCCCATGCGAGTTTtgtgaaaaaacattttctcaaaaatggTGTTTGAAAACTCACACCGATtcgtttcataaaaatatcaattaccCATGA
- Protein Sequence
- MESSGTLNCAVRVKEEPIDVLLGENDYIVIDKTADVNNFQFLRHSHENRIHMLQKSDENHESQHDDLAIELECKDMKPSLDLLAVMKIENCSEDHLAAIENGNEYQTQNIKLEPLDAVKKESFVDDANQFNMNSNCELSKPKNRRTVMKKLNYNHNIKKHIVDMPNGKIAYPCDTCGKAFRQRKSLKVHIDSVHLKITHSCDLCGKTFSVKSYLKMHIEAIHNGKTPTCDICQKTFSQMSNLRSHINSVHNGTITHSCDTCGKSFGRKSNLKNHIDSMHLKITHGCDLCGKTFSVKSYLKMHIEAIHNGKTPTCDICGKTFSQKGNLQTHINLVHDCKITHSCDTCGKSFGRKSNLKNHIDSMHLKITHGCDLCEKSFSLKGYLKKHIEAIHNGKTPTCDICGKTFSQKGSLQTHIDSVHNRMKSYECDVCGKKFSRKGTLKIHTNSMHKGTTYPCDFCGKTFSQKSYLKYHIDSAHNSIRQECDTCGKSFSAKSYLKIHIEAIHNGKTPTCDICGKTFSQKGNLQTHINLMHDCKIAHSCDTCGKSFGRKSNLKNHIDSMHLKITHGCDLCEKSFSLKGYLKKHIEAIHNGKTPTCDICGKTFSQKGSLQTHINLVHNSKKSYECDACGKKFFRKDRLKHHTDFAHNGITFPCEFCEKTFSQKWCLKTHTDSFHKNINYP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485811; iTF_01484887;
- 90% Identity
- iTF_01485811; iTF_01484887;
- 80% Identity
- iTF_01485811; iTF_01484887;