Tpre003787.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:227066-230021[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 8e-06 0.00013 21.7 0.6 2 23 134 156 133 156 0.95 2 22 1.1e-05 0.00017 21.3 0.9 1 23 161 184 161 184 0.94 3 22 2.5e-07 4e-06 26.5 0.9 2 23 190 212 190 212 0.96 4 22 1.7e-05 0.00028 20.7 3.9 1 23 218 241 218 242 0.95 5 22 1.1e-05 0.00018 21.3 0.7 1 23 246 269 246 269 0.93 6 22 8.6e-07 1.4e-05 24.8 2.5 2 23 275 297 275 297 0.97 7 22 8.4e-06 0.00014 21.6 0.5 1 23 303 326 303 326 0.96 8 22 3e-05 0.00049 19.9 1.8 1 23 331 354 331 355 0.94 9 22 9.7e-06 0.00016 21.4 0.1 1 23 359 382 359 382 0.96 10 22 2.5e-07 4e-06 26.5 0.9 2 23 388 410 388 410 0.96 11 22 5e-06 8.1e-05 22.4 2.7 1 23 416 439 416 440 0.94 12 22 9.2e-06 0.00015 21.5 5.6 1 23 444 467 444 468 0.95 13 22 2.6e-06 4.2e-05 23.3 2.2 1 23 472 495 472 495 0.94 14 22 1.2e-07 1.9e-06 27.5 1.2 2 23 501 523 501 523 0.97 15 22 1.2e-05 0.0002 21.1 3.0 1 23 529 552 529 553 0.95 16 22 1.3e-05 0.00021 21.1 0.2 1 23 557 580 557 580 0.93 17 22 7.5e-07 1.2e-05 24.9 1.5 2 23 586 608 586 608 0.96 18 22 4.4e-05 0.00071 19.4 1.9 5 23 618 637 617 638 0.93 19 22 8.1e-06 0.00013 21.7 1.4 1 23 642 665 642 665 0.92 20 22 6.7e-06 0.00011 21.9 0.1 2 23 671 693 671 693 0.92 21 22 2e-05 0.00033 20.4 5.4 1 23 698 721 698 721 0.96 22 22 0.00065 0.011 15.7 0.7 1 23 726 749 726 749 0.94
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGATATACTCAATTGTGCCATCAGAATAAAAGAGGAGCCTAGTGATGAGTCGCCTGATCTCAAAAACTTCCTACTCTTACCATTCCCGCCAGAAAATTCGattcaaacaataaaaaaaagcgaagaaaatCTTGGAAGTGAACTCGACGACGAAGTGGAAATAATTGTTGAATGTGAAGACGTCAAGCCCAACATTCCCATAATTAAATTAGAAGCTTTGGatgcagtaaaaaaagaatcactAGTGAATGACGTAAAACAGTTAAATATGAATTCCAACTGCAGAATCAGCGAGCCAAAGAACAGAAAAAcagttatgaaaaatgtgaatTATAATCATAAACTCAAAGAACACATTGCTGACATGCCGAATCGTAAAATCAACCAAACTTGTGatgtatgtgaaaaaaaattttcaacgaagggtaatttaaaaactcacaTTGATTCGGTGCATCTTAAAATCACTCATGCCTGTGATGTATGTGAGAAGTCATTCTCATTTAAAGATtctctcaaaaaacatattgaaGTGATACATAATGGTAAAACTCCTACATGCGATATCTGCGGAAAGACGTTCTCGCACAAGGGTAATCTCCAAATCCACATCAACTCGGTGCATAATCGGAAAATCACCCATTCTTGTGATAAATGTGGAAAGTCATACGGACGTAAGAGCactcttaaaaaacacatcgaatCGGTGCATCATAAAATTACTCATACCTGTGACTtatgtggaaagtcattcTCACTTAAAAGTTACCTCAAAATACATATTGAAGCGATACATAATGGTGAAACTCCAACATGCCATATCTGCGGAAAGACGTTTTCTAAAACGAGTAATCTCCAAACGCACATCAATTCGGTTCATAATTACCGAGAAGGTTACGAATGTGACGTATGTGGCAAGAAGTTCTCGCTAAAGGGCAATTTTAAAACCCACATTGATTCAGAACATTATAAGATCACTCATGCCTGTGCTAcatgtggaaagtcattcGGACGTAAGAGCACTCTTAAAATACACATCGAATCGGTGCACCATAAAATCACTTATGCCTGTGATATATGTGAAAAGTCATTCTCACTTAAAGCTtctctcaaaaaacatattgaaGTGATACATAATGGTAAAACTCCTACATGCGATATCTGCGGAAAGACGTTCTCGCACAAGGGTAATCTCCAAATCCACATCAACTCGGTGCATAATCGGAAAATCACCCATTCTTGTGTTAcatgtggaaagtcattcGGACAGAAGAGCAATCTCCAaagacacatcgattcggtgcaccATAAAATCACTCATACCTGTGACTtatgtggaaagtcattcGGACATAAGAGcaatcttaaaaaacacatcgacTCGATGCACCATAAAATCACTCATGCCTGTGAAGTATGTGGAAAGACGTTCTCTCACAAGAATAATCTCCAAACCCACATTGATTCAATACATAATGGTAAAACTCCCACATGCCATATCTGCGGAAAGACGTTCTCTCAAAAGGGTAATCTCCAAATCCACATCAACTCGGTGCATAATCGGAAAATCACCCATTCTTGTGTTAcatgtggaaagtcatttaTGCGTAAGAGCAATCTTAAAATACACATCGAATCGGTGCACCATAAAATCACTTATGCCTGTGATATATGTGAAAAGTCATTCTCACTTAAAGATtctctcaaaaaacatattgaagcgatgcataatggtaaaACTCCCACATGCGATATCTGCAGAAAGACGTTCTCTCAAAAGAGTAATCTTCGCACCCACATCAactcggtgcataatggtaaaATCACTCATTCTTATGATAcatgtggaaagtcattcaGACATAAGAGTAATCTTAAAATACACATCGAATCGGTGCATCATAAAATTACTCATACCTGTGACTtatgcggaaagtcattcTCATTTAAAGATTCTCTCAAAAAACATGTTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCGGAAAGATGTTCTCTCAAAAGGGTTATCTCCAAACCCACATCGATGCAGTGCATACTGGTATCACATATAAATGTGATACgtgcgaaaagacattcacacaaaaatgtAATCTCAAAAGACACCTTTTTTCGGTACATAGAGAAATTACTCATAAATGTGTTATATGCTTGGAGACATTTGTACGAAAGGATCAGCTTAAAATCCACGTCGATTCGATGCATAATAAAGTCCCTCATACATGTGATTAA
- Protein Sequence
- MESSDILNCAIRIKEEPSDESPDLKNFLLLPFPPENSIQTIKKSEENLGSELDDEVEIIVECEDVKPNIPIIKLEALDAVKKESLVNDVKQLNMNSNCRISEPKNRKTVMKNVNYNHKLKEHIADMPNRKINQTCDVCEKKFSTKGNLKTHIDSVHLKITHACDVCEKSFSFKDSLKKHIEVIHNGKTPTCDICGKTFSHKGNLQIHINSVHNRKITHSCDKCGKSYGRKSTLKKHIESVHHKITHTCDLCGKSFSLKSYLKIHIEAIHNGETPTCHICGKTFSKTSNLQTHINSVHNYREGYECDVCGKKFSLKGNFKTHIDSEHYKITHACATCGKSFGRKSTLKIHIESVHHKITYACDICEKSFSLKASLKKHIEVIHNGKTPTCDICGKTFSHKGNLQIHINSVHNRKITHSCVTCGKSFGQKSNLQRHIDSVHHKITHTCDLCGKSFGHKSNLKKHIDSMHHKITHACEVCGKTFSHKNNLQTHIDSIHNGKTPTCHICGKTFSQKGNLQIHINSVHNRKITHSCVTCGKSFMRKSNLKIHIESVHHKITYACDICEKSFSLKDSLKKHIEAMHNGKTPTCDICRKTFSQKSNLRTHINSVHNGKITHSYDTCGKSFRHKSNLKIHIESVHHKITHTCDLCGKSFSFKDSLKKHVEAIHNGKTPTCDICGKMFSQKGYLQTHIDAVHTGITYKCDTCEKTFTQKCNLKRHLFSVHREITHKCVICLETFVRKDQLKIHVDSMHNKVPHTCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484924;
- 90% Identity
- iTF_01484924;
- 80% Identity
- iTF_01484924;