Tpre003787.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:227066-230021[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0029 0.22 11.1 0.8 2 43 118 156 117 157 0.88 2 22 7.1 5.3e+02 0.2 0.1 19 40 163 181 160 185 0.77 3 22 0.041 3.1 7.4 2.7 18 44 190 213 176 213 0.84 4 22 0.055 4.1 7.0 3.7 19 43 220 241 216 242 0.94 5 22 1.8 1.3e+02 2.2 0.3 18 39 247 265 245 270 0.74 6 22 9.6e-05 0.0072 15.8 2.9 18 44 275 298 271 298 0.95 7 22 0.05 3.8 7.1 0.1 18 43 304 326 302 327 0.91 8 22 0.88 65 3.1 2.1 19 43 333 354 329 355 0.93 9 22 1.7 1.3e+02 2.2 0.3 19 40 361 379 358 383 0.77 10 22 0.044 3.3 7.3 2.8 18 44 388 411 374 411 0.84 11 22 0.33 25 4.5 1.9 19 43 418 439 414 440 0.92 12 22 0.12 8.7 6.0 4.5 18 43 445 467 442 468 0.94 13 22 0.069 5.2 6.7 2.2 19 44 474 496 471 496 0.92 14 22 0.01 0.75 9.4 0.9 18 44 501 524 497 524 0.89 15 22 0.33 25 4.5 3.5 19 43 531 552 527 553 0.94 16 22 0.21 16 5.1 0.2 19 44 559 581 556 581 0.91 17 22 6.6e-05 0.0049 16.4 0.7 18 44 586 609 582 609 0.94 18 22 5.1 3.8e+02 0.7 1.6 22 43 619 637 617 638 0.87 19 22 1.5 1.1e+02 2.4 0.3 18 39 643 661 641 666 0.75 20 22 0.15 12 5.6 0.5 3 29 657 682 655 694 0.75 21 22 0.028 2.1 7.9 2.8 18 44 699 722 692 722 0.93 22 22 3.9 2.9e+02 1.1 0.4 18 43 727 749 723 750 0.84
Sequence Information
- Coding Sequence
- ATGGAATCCAGTGATATACTCAATTGTGCCATCAGAATAAAAGAGGAGCCTAGTGATGAGTCGCCTGATCTCAAAAACTTCCTACTCTTACCATTCCCGCCAGAAAATTCGattcaaacaataaaaaaaagcgaagaaaatCTTGGAAGTGAACTCGACGACGAAGTGGAAATAATTGTTGAATGTGAAGACGTCAAGCCCAACATTCCCATAATTAAATTAGAAGCTTTGGatgcagtaaaaaaagaatcactAGTGAATGACGTAAAACAGTTAAATATGAATTCCAACTGCAGAATCAGCGAGCCAAAGAACAGAAAAAcagttatgaaaaatgtgaatTATAATCATAAACTCAAAGAACACATTGCTGACATGCCGAATCGTAAAATCAACCAAACTTGTGatgtatgtgaaaaaaaattttcaacgaagggtaatttaaaaactcacaTTGATTCGGTGCATCTTAAAATCACTCATGCCTGTGATGTATGTGAGAAGTCATTCTCATTTAAAGATtctctcaaaaaacatattgaaGTGATACATAATGGTAAAACTCCTACATGCGATATCTGCGGAAAGACGTTCTCGCACAAGGGTAATCTCCAAATCCACATCAACTCGGTGCATAATCGGAAAATCACCCATTCTTGTGATAAATGTGGAAAGTCATACGGACGTAAGAGCactcttaaaaaacacatcgaatCGGTGCATCATAAAATTACTCATACCTGTGACTtatgtggaaagtcattcTCACTTAAAAGTTACCTCAAAATACATATTGAAGCGATACATAATGGTGAAACTCCAACATGCCATATCTGCGGAAAGACGTTTTCTAAAACGAGTAATCTCCAAACGCACATCAATTCGGTTCATAATTACCGAGAAGGTTACGAATGTGACGTATGTGGCAAGAAGTTCTCGCTAAAGGGCAATTTTAAAACCCACATTGATTCAGAACATTATAAGATCACTCATGCCTGTGCTAcatgtggaaagtcattcGGACGTAAGAGCACTCTTAAAATACACATCGAATCGGTGCACCATAAAATCACTTATGCCTGTGATATATGTGAAAAGTCATTCTCACTTAAAGCTtctctcaaaaaacatattgaaGTGATACATAATGGTAAAACTCCTACATGCGATATCTGCGGAAAGACGTTCTCGCACAAGGGTAATCTCCAAATCCACATCAACTCGGTGCATAATCGGAAAATCACCCATTCTTGTGTTAcatgtggaaagtcattcGGACAGAAGAGCAATCTCCAaagacacatcgattcggtgcaccATAAAATCACTCATACCTGTGACTtatgtggaaagtcattcGGACATAAGAGcaatcttaaaaaacacatcgacTCGATGCACCATAAAATCACTCATGCCTGTGAAGTATGTGGAAAGACGTTCTCTCACAAGAATAATCTCCAAACCCACATTGATTCAATACATAATGGTAAAACTCCCACATGCCATATCTGCGGAAAGACGTTCTCTCAAAAGGGTAATCTCCAAATCCACATCAACTCGGTGCATAATCGGAAAATCACCCATTCTTGTGTTAcatgtggaaagtcatttaTGCGTAAGAGCAATCTTAAAATACACATCGAATCGGTGCACCATAAAATCACTTATGCCTGTGATATATGTGAAAAGTCATTCTCACTTAAAGATtctctcaaaaaacatattgaagcgatgcataatggtaaaACTCCCACATGCGATATCTGCAGAAAGACGTTCTCTCAAAAGAGTAATCTTCGCACCCACATCAactcggtgcataatggtaaaATCACTCATTCTTATGATAcatgtggaaagtcattcaGACATAAGAGTAATCTTAAAATACACATCGAATCGGTGCATCATAAAATTACTCATACCTGTGACTtatgcggaaagtcattcTCATTTAAAGATTCTCTCAAAAAACATGTTGAAGCGATACATAATGGTAAAACTCCCACATGCGATATCTGCGGAAAGATGTTCTCTCAAAAGGGTTATCTCCAAACCCACATCGATGCAGTGCATACTGGTATCACATATAAATGTGATACgtgcgaaaagacattcacacaaaaatgtAATCTCAAAAGACACCTTTTTTCGGTACATAGAGAAATTACTCATAAATGTGTTATATGCTTGGAGACATTTGTACGAAAGGATCAGCTTAAAATCCACGTCGATTCGATGCATAATAAAGTCCCTCATACATGTGATTAA
- Protein Sequence
- MESSDILNCAIRIKEEPSDESPDLKNFLLLPFPPENSIQTIKKSEENLGSELDDEVEIIVECEDVKPNIPIIKLEALDAVKKESLVNDVKQLNMNSNCRISEPKNRKTVMKNVNYNHKLKEHIADMPNRKINQTCDVCEKKFSTKGNLKTHIDSVHLKITHACDVCEKSFSFKDSLKKHIEVIHNGKTPTCDICGKTFSHKGNLQIHINSVHNRKITHSCDKCGKSYGRKSTLKKHIESVHHKITHTCDLCGKSFSLKSYLKIHIEAIHNGETPTCHICGKTFSKTSNLQTHINSVHNYREGYECDVCGKKFSLKGNFKTHIDSEHYKITHACATCGKSFGRKSTLKIHIESVHHKITYACDICEKSFSLKASLKKHIEVIHNGKTPTCDICGKTFSHKGNLQIHINSVHNRKITHSCVTCGKSFGQKSNLQRHIDSVHHKITHTCDLCGKSFGHKSNLKKHIDSMHHKITHACEVCGKTFSHKNNLQTHIDSIHNGKTPTCHICGKTFSQKGNLQIHINSVHNRKITHSCVTCGKSFMRKSNLKIHIESVHHKITYACDICEKSFSLKDSLKKHIEAMHNGKTPTCDICRKTFSQKSNLRTHINSVHNGKITHSYDTCGKSFRHKSNLKIHIESVHHKITHTCDLCGKSFSFKDSLKKHVEAIHNGKTPTCDICGKMFSQKGYLQTHIDAVHTGITYKCDTCEKTFTQKCNLKRHLFSVHREITHKCVICLETFVRKDQLKIHVDSMHNKVPHTCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485036;
- 90% Identity
- iTF_01485036;
- 80% Identity
- iTF_01485036;