Tpre012063.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:338307-341528[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3e-05 0.00049 19.9 1.4 2 23 161 183 160 183 0.96 2 23 4.8e-06 7.9e-05 22.4 0.2 1 23 188 211 188 211 0.97 3 23 1.4e-05 0.00023 20.9 0.6 1 23 217 240 217 240 0.96 4 23 5.1e-05 0.00083 19.2 3.1 1 23 245 268 245 268 0.95 5 23 4e-05 0.00066 19.5 0.7 1 23 273 296 273 296 0.96 6 23 1.1e-05 0.00018 21.3 1.3 1 23 302 325 302 325 0.94 7 23 2.1e-06 3.4e-05 23.5 0.9 2 23 331 353 330 353 0.93 8 23 2e-06 3.2e-05 23.6 6.4 1 23 359 382 359 382 0.96 9 23 0.00016 0.0026 17.6 1.6 2 23 530 552 529 552 0.96 10 23 0.00037 0.006 16.5 0.4 1 23 557 580 557 580 0.96 11 23 3.4e-05 0.00056 19.7 2.0 1 23 586 609 586 609 0.95 12 23 2.7e-06 4.5e-05 23.2 0.1 1 23 614 637 614 637 0.95 13 23 2.2e-07 3.7e-06 26.6 0.8 1 23 643 666 643 666 0.95 14 23 5e-07 8.2e-06 25.5 0.2 1 23 671 694 671 694 0.96 15 23 8.4e-07 1.4e-05 24.8 1.1 1 23 700 723 700 723 0.96 16 23 0.00042 0.0068 16.3 0.7 1 23 728 751 728 751 0.94 17 23 4e-07 6.6e-06 25.8 0.7 1 23 757 780 757 780 0.94 18 23 3.2e-06 5.1e-05 23.0 0.3 1 23 785 808 785 808 0.96 19 23 1.3e-05 0.00022 21.0 1.9 1 23 814 837 814 837 0.96 20 23 5.8e-06 9.5e-05 22.1 0.2 1 23 842 865 842 865 0.95 21 23 4.2e-06 6.9e-05 22.6 1.9 1 23 871 894 871 894 0.95 22 23 1.2e-06 2e-05 24.3 1.3 1 23 899 922 899 922 0.95 23 23 1.3e-05 0.00021 21.0 1.0 1 23 928 951 928 951 0.95
Sequence Information
- Coding Sequence
- ATGGAGTCCCGTACATTCAACTATGCTGctgaAGTGAAAGAAGAATTCAATGATATGCATTATTACGAAAATGATAGTGGTGAAACGGAAGAACAATCAACCGATACTAAAAATTTGCAATTGCTCAGATGTCTGCAAGAGAATACCAATAATACGCTTGAAGAGCACAAAGGAATCGATGAATTTCAACCTAACCAAGGTATTAAAATAGAAttcgagtgcaaagatgtgAAACCCGATGTAAACTTATTAGTACCTGTTAAAGTGAATGCTTGTTCTTATGGGTTTGATGAATATGATGATGTAAAAATTAGCGAAAATCTTGCAACTCATTCCTCGATTAAAGTAGAAACTGAGAGCATAATCAAAGAAGAATTTTACAGCGATACTATGAAAACTATAGATTTAGATACTGGAAGTAAACTGAACGGACAGAAAATGAAGATGTGTCCTTtagtaaagagaaaaaaacaatctaTGCAATGCAAGttgtgtttgaaaaaattttcttcaaaacgAAATCTAGAGAGACATATTGATACGGTGCATAAGTGTATCTCTTACCCGTGTGACATTTGTGGAAAATCATTTAAAGGCAAAGCTttcctcaaaattcacattaaTTCATTGCATAATCGTCAAAAATCTTACAACTGCGATATATGCGAAAAGTCGTTTGTGCGTAAGCATGGTTTGAGAGTTCATATTGATTCGATACATAATCATATCAATCATCCATGTCACACGTGCGAAAAgtcattttcattcaagagTGCTCTGAAAACTCACATTGATATGGTGCATAAACGTATCACTTACCCATGTGACTTTTGTAAAAAGACATTCTCACAAAAAAGTTATCTTGGAGTTCATATCGACTCATTGCACAATGGTCGAAAACCTTACAACTGTGATAtatgtggaaagtcattttcCCATAAGGGTACTATGAAAACTCATATTGATAATGTGCATAATCTTATTGCTTGCCCGTGTAACATTtgtggaaagtcattttcatacaatagttatctcaaaattcacattgattcagtgcataatggtcGAAAATCTCACCACTGCGATATATGCGGGAAGTCATTTAAACAAAAGAGTCATCTGAAAACACATATTAATTCGATACATAAACGTATCTCTCACCCGTctgatatttgtaaaaagacATACGCTCATACGCTCGAAGAACACAGAGAAATGAATGATTTTCAATCTaaccaagaaattaaaatagagTTTGAGTGCGAAGATGAAAAATCCGATGTAAATTTATTAGTAACTGCTGAAGCGAGCGAAAgaattcatgaatttcaacctaaccaagaaattaaaatagagTTTGAGTGCAAAGACGTGAAACCAGCTGTGAATTTATTAGTACCCAATAAAGTAAACGATTGGTCGAACGATTTTGCTACTAATTCctcaattaaaatagaaactgAGAGCATAGTCAAGAAAGAGTTTCTCAgcgatattataaaaagtatagatTTCAATACTGGAAGCGAACTCCATGGAAAGGATACCAAAATTAGTCCTCAAATAGAGAAACCCCAAAAATCTAATCAATGTgagaaatgttttaaaaatttttcttcaaaaaacaGTTTGAAAAACCACATTGATATGGTGCATAAACGTATCACTTACCCGTGTGACATTTgtgaaaagaattttaaaatcaaaaattatctGAAGTCACAtattgattcagtgcataatggtcGAAAATCTCACAGCTGCGATAcatgcggaaagtcatttgtacaaaaaagtgCTTTTAAATTACACATTGATTCTAAGCATAATCGTATCAGTTACCCATGTGGCATTTGTGGAAAAACATTTGTAAATACAAGTAATCTCAAAGTGCATACGGATTCAGTGCATGATAATCGAAAACCTCACAGCTGCGATGtatgcggaaagtcatttgcacaaaaaagtaatctgaAAAATCACATTGATATGGTGCATAAACGTATTGCTTACCCGTGTGACATTtgtggaaagtcattttcatacaatagttatctcaaaattcacattgattcagtacataatggtcGAAAATCTCACAACTGCGATATATGCGGGAAGTCATTTACACTAAAGAGTAATCTGGAAACACATATTAATTCGATACATAAACGTATCTCTTACccgtgtgatatttgtaaaaagacATTTTCCTATAAGGGTAGTCTCAAATTTCATAttgattcagtacataatggtcGAAAATCGCACAACTGCGATGtatgcggaaagtcatttgtacaaaaaagtaatctgaAAAATCACATTGATGTGGTGCATAATTGTATTGCTTACTCGTGTGACATTTGTGAAAAGTCATTTACAAATAAGGGTTATCTCACAGTACATATCGATTCATTGCATACTGATCGCAACCCTCACAGCTGCAATAcatgcggaaagtcattttcatTCAAGCGTGCTCTGAAAATCCATATTGATACGGTGCACAAACGTATCACTTACGCGTGTGACATTTGTGAAAAGTCATTTACAACTAAGGGTTATCTCAGAATACATATCGATTCACTGCATAATGGTCGAAATCCTCACAGCTGCAATAcatgcggaaagtcatttgtacaaaaaagttCTTTAAAATTACACATTGATTCTATGCATAAACTTATCAATTTCCCATGTCACAAGTGTGGAAAAACATTTGTAAATAAGGGTAATCTCAAAGTACATACGGATTCAGTGCATGATAATCGAAAACCTCACAGCTGCGATGTATGCGGGAAGTCATTTGTACGAAAAGGTTCTCTGAAAATCCATTTTGATACGGTGCATAATTGA
- Protein Sequence
- MESRTFNYAAEVKEEFNDMHYYENDSGETEEQSTDTKNLQLLRCLQENTNNTLEEHKGIDEFQPNQGIKIEFECKDVKPDVNLLVPVKVNACSYGFDEYDDVKISENLATHSSIKVETESIIKEEFYSDTMKTIDLDTGSKLNGQKMKMCPLVKRKKQSMQCKLCLKKFSSKRNLERHIDTVHKCISYPCDICGKSFKGKAFLKIHINSLHNRQKSYNCDICEKSFVRKHGLRVHIDSIHNHINHPCHTCEKSFSFKSALKTHIDMVHKRITYPCDFCKKTFSQKSYLGVHIDSLHNGRKPYNCDICGKSFSHKGTMKTHIDNVHNLIACPCNICGKSFSYNSYLKIHIDSVHNGRKSHHCDICGKSFKQKSHLKTHINSIHKRISHPSDICKKTYAHTLEEHREMNDFQSNQEIKIEFECEDEKSDVNLLVTAEASERIHEFQPNQEIKIEFECKDVKPAVNLLVPNKVNDWSNDFATNSSIKIETESIVKKEFLSDIIKSIDFNTGSELHGKDTKISPQIEKPQKSNQCEKCFKNFSSKNSLKNHIDMVHKRITYPCDICEKNFKIKNYLKSHIDSVHNGRKSHSCDTCGKSFVQKSAFKLHIDSKHNRISYPCGICGKTFVNTSNLKVHTDSVHDNRKPHSCDVCGKSFAQKSNLKNHIDMVHKRIAYPCDICGKSFSYNSYLKIHIDSVHNGRKSHNCDICGKSFTLKSNLETHINSIHKRISYPCDICKKTFSYKGSLKFHIDSVHNGRKSHNCDVCGKSFVQKSNLKNHIDVVHNCIAYSCDICEKSFTNKGYLTVHIDSLHTDRNPHSCNTCGKSFSFKRALKIHIDTVHKRITYACDICEKSFTTKGYLRIHIDSLHNGRNPHSCNTCGKSFVQKSSLKLHIDSMHKLINFPCHKCGKTFVNKGNLKVHTDSVHDNRKPHSCDVCGKSFVRKGSLKIHFDTVHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484962;
- 90% Identity
- iTF_01484962;
- 80% Identity
- iTF_01484962;