Basic Information

Insect: Trichogramma pretiosum
Gene Symbol: -
Assembly: GCA_000599845.3
Location: NW:1199012-1201839[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 1.9e-05 0.00031 20.5 1.0 2 23 172 194 171 195 0.91

2 25 0.00024 0.004 17.0 0.4 1 23 199 222 199 222 0.91

3 25 3.5e-07 5.7e-06 26.0 0.9 2 23 228 250 228 250 0.96

4 25 1.4e-06 2.3e-05 24.1 4.1 1 23 256 279 256 280 0.95

5 25 5.9e-06 9.6e-05 22.1 0.3 1 23 284 307 284 307 0.93

6 25 2.7e-05 0.00044 20.1 0.9 2 23 313 335 313 335 0.96

7 25 1.6e-05 0.00026 20.8 0.4 3 23 342 363 341 364 0.95

8 25 0.0047 0.077 13.0 2.5 1 23 368 391 368 391 0.92

9 25 1.1e-05 0.00019 21.2 2.7 2 23 397 419 397 419 0.95

10 25 2.3e-05 0.00037 20.3 2.5 1 23 425 448 425 448 0.95

11 25 0.0089 0.15 12.1 0.5 8 23 454 470 453 470 0.93

12 25 1.2e-05 0.0002 21.1 3.5 1 23 475 498 475 498 0.97

13 25 3e-07 4.9e-06 26.2 0.3 2 23 504 526 503 526 0.95

14 25 1.7e-06 2.8e-05 23.8 0.5 1 23 531 554 531 554 0.97

15 25 2.4e-07 3.9e-06 26.5 2.1 1 23 560 583 560 583 0.97

16 25 1.5e-05 0.00024 20.9 1.4 1 23 588 611 588 611 0.97

17 25 3.7e-06 6e-05 22.8 0.3 1 23 617 640 617 640 0.96

18 25 1.7e-05 0.00028 20.6 4.0 1 23 645 668 645 669 0.95

19 25 0.0047 0.077 13.0 2.5 1 23 673 696 673 696 0.92

20 25 1.2e-06 2e-05 24.3 2.1 2 23 702 724 702 724 0.97

21 25 1.9e-06 3.1e-05 23.7 2.1 2 23 731 753 731 753 0.95

22 25 1.5e-05 0.00024 20.9 1.7 1 23 758 781 758 781 0.97

23 25 3.7e-06 6e-05 22.8 0.3 1 23 787 810 787 810 0.96

24 25 1.1e-05 0.00017 21.3 0.0 1 23 815 838 815 838 0.93

25 25 3.4e-05 0.00055 19.8 1.8 1 23 844 867 844 867 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	1.9e-05	0.00031	20.5	1.0	2	23	172	194	171	195	0.91
2	25	0.00024	0.004	17.0	0.4	1	23	199	222	199	222	0.91
3	25	3.5e-07	5.7e-06	26.0	0.9	2	23	228	250	228	250	0.96
4	25	1.4e-06	2.3e-05	24.1	4.1	1	23	256	279	256	280	0.95
5	25	5.9e-06	9.6e-05	22.1	0.3	1	23	284	307	284	307	0.93
6	25	2.7e-05	0.00044	20.1	0.9	2	23	313	335	313	335	0.96
7	25	1.6e-05	0.00026	20.8	0.4	3	23	342	363	341	364	0.95
8	25	0.0047	0.077	13.0	2.5	1	23	368	391	368	391	0.92
9	25	1.1e-05	0.00019	21.2	2.7	2	23	397	419	397	419	0.95
10	25	2.3e-05	0.00037	20.3	2.5	1	23	425	448	425	448	0.95
11	25	0.0089	0.15	12.1	0.5	8	23	454	470	453	470	0.93
12	25	1.2e-05	0.0002	21.1	3.5	1	23	475	498	475	498	0.97
13	25	3e-07	4.9e-06	26.2	0.3	2	23	504	526	503	526	0.95
14	25	1.7e-06	2.8e-05	23.8	0.5	1	23	531	554	531	554	0.97
15	25	2.4e-07	3.9e-06	26.5	2.1	1	23	560	583	560	583	0.97
16	25	1.5e-05	0.00024	20.9	1.4	1	23	588	611	588	611	0.97
17	25	3.7e-06	6e-05	22.8	0.3	1	23	617	640	617	640	0.96
18	25	1.7e-05	0.00028	20.6	4.0	1	23	645	668	645	669	0.95
19	25	0.0047	0.077	13.0	2.5	1	23	673	696	673	696	0.92
20	25	1.2e-06	2e-05	24.3	2.1	2	23	702	724	702	724	0.97
21	25	1.9e-06	3.1e-05	23.7	2.1	2	23	731	753	731	753	0.95
22	25	1.5e-05	0.00024	20.9	1.7	1	23	758	781	758	781	0.97
23	25	3.7e-06	6e-05	22.8	0.3	1	23	787	810	787	810	0.96
24	25	1.1e-05	0.00017	21.3	0.0	1	23	815	838	815	838	0.93
25	25	3.4e-05	0.00055	19.8	1.8	1	23	844	867	844	867	0.96

Sequence Information

Coding Sequence: ATGGAATCGAGTGAAATATTTAACTGTGATatgagAGTGAAACAAGAGCCAATCGACGTGTTGCTCGGTGAAAATGATTACATCGTAATCAACCAGACAGCCGAtgtcaacaattttcaattcctCAGGCATCCACGAGAAAATCGAATTCGCGTGCTTCGAAAATCTGACGATAATCACGAAAGTGAACTTGACGACTTGGCAATCGAGTTGGAATGTAAAGACATGAAGCCGAGCTTGGATTTATTAGCggttatgaaaattgaaaattgttctgAAGATCACTTGTCGGTTGGTGAAAATAGTAATGAATATcaacttcaaaaaataattaaaaaagaaaacgtcacgaatgtgaaaaaagaatttttcgacgacgtTCCGAAAGAATTTGATATGAATTCCAACCGCGGAGTCAGTGAgccaaataaaagaaaagcagttgtaaaaaagttgaacTATAATCATAAACTGAAAAGACGCTCTGGTACGGGACGTGGTAATATTACCCTTTCTTGTGAAACATGTGGAAAGGCATTCAGATATAAGAGCACTCTTAAAAATCACATCGACGCGGTGCATCATAAAATCACTCATGACTGTGCAGtatgtggaaagtcattcCAACTTAAAGATtctctcaaaaaacatattgaaGCGATACATAATGGTAAAACTCCGACATGCGATATCTGCGGAAAGACGTTCTCGCAAAAGGGCCATCTCCAAATCCACATCAACTCGGTACATAATGGTACAATCACCCATTCTTGTGATAcatgtggaaagtcatttaGACGTAAGAGCAATCTTAAAATGCACATCGAATCGGTGCACCATAAAATCACTTATGCCTGTGATATATGTGAAAAGTCATTCTCATTTAAAGATtctctcaaaaaacatattgaaGCGTTACATAATGGTAAAACTCCCACATGCGATATCTGCAAAAAGACGTTCTTTCAAATGAGTAATCTTCGCATCCACATCAACTCAGTACATAATAAGATCACTCGTGCCTGTGCTATATGTGGAAAGGCATTCAGATATAAGAGCACTCTTAAAATACACATCGAATCGGTGCACcataaaattactcatgcctgtgatacatgtggaaagtcattctcatgtaaaatttatctgaaaaaacACATTGAAGCAATACATAATGGTAAAGCTCCCACATGTCATATCTGCAAAAAGACGTTCTCTCAAATGAGTAATCTTCGcacccacatcgattcggttcataataaaacaaaaagttacGAATGTGACGTGTGTGGCAAGAAGTTCTCGCAAAAGGATCGTTTGAAACATCATACCGATTCGATGCATAAAAGCATCATCAAAAAgtcattttctcaaaaaagtaatttgaaaactcATATCGATTCGGCTCATAACAGTATCAAACATAAATGTGATACTTGTGAAAAGTCATTCTCATTCAAAAGTTatctaaaaaatcatattgaaACGATACATAATGGTAAAACTTCCACATGTGATATCTGTGGAAAGACGTTCTCTCAAAAGGGTAACCTCCAAAACCACATTGATTCGATACATAATGGTAAAACCTATGCATGCGATATCTGCGCAAAGACATTTACTCAAAAGAGTAGTCTCCGAACCCACATCAACTCGGTTCATTATGgtgaaaaaagttacgaatGTGACGTATGTGGCAAGAAGTTTTCGCGAAAGGATAATCTGAAAGTTCATATCCATTCAAGGCATAATGGTATCATATACCCGTGCGATTTTTGCAGAAAGACGTTTtcctataaaataaatttaaaaactcacaTCAATTCGGTACATAATAgtgaaaaaagttacgaatGTGACGTGTGTGGAAAGAAGTTCTCGCGAAAGGATGTTCTGAAAAGTcatatcgattcggtgcatctTAAAGTCACCCATAGTTGTGACAAATGTGGAAAGGCATTCGCACATAAGAGAAATCTCAAAGTTCACATCGAATCGGTGCACCATAAAATCACTCATGCCTGTGATAcatgtggaaagtcattctcatgtaaaatttatctgaaaaaacACATTGAAGCAATACATAATGGTAAAGCTCCCACATGTCATATCTGCAAAAAGACGTTCTCGCAAAAGGGTAATCTCCAAATCCACATCAACTCGGTTCATAATAGTCAAAAAAGTAACGAATGTGACGTATGTGGCAAGAAGTTTTCGCGAAAGGATAATCTGAAAGTTCATATCCATTCAAGGCATAATGGTATCACATACCCGTGCGATTTTTGCAGAAAGACGTTTTcctataaaatgaatttaaaaactcaCATCAATTCGGTACATAATAgtgaaaaaagttacgaatGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGATGTTCTGAAAAGTcatatcgattcggtgcataataacATCACTTATCCATGCGATGTATGCGGAAAGGCATTCATACGCAAACCCTCTCTGAGAGCTCACATTGATGAGGTGCATAATGGTAAAAAACCTTACAAATGTGACACGTGTGGCAGGAAATTCTCACGGAAGTATGTCCTCAAAACTCATACGGAAATAATGCATAATGGCATCACCTACTCACGTGATTATGTGGAAAGAAATTAA
Protein Sequence: MESSEIFNCDMRVKQEPIDVLLGENDYIVINQTADVNNFQFLRHPRENRIRVLRKSDDNHESELDDLAIELECKDMKPSLDLLAVMKIENCSEDHLSVGENSNEYQLQKIIKKENVTNVKKEFFDDVPKEFDMNSNRGVSEPNKRKAVVKKLNYNHKLKRRSGTGRGNITLSCETCGKAFRYKSTLKNHIDAVHHKITHDCAVCGKSFQLKDSLKKHIEAIHNGKTPTCDICGKTFSQKGHLQIHINSVHNGTITHSCDTCGKSFRRKSNLKMHIESVHHKITYACDICEKSFSFKDSLKKHIEALHNGKTPTCDICKKTFFQMSNLRIHINSVHNKITRACAICGKAFRYKSTLKIHIESVHHKITHACDTCGKSFSCKIYLKKHIEAIHNGKAPTCHICKKTFSQMSNLRTHIDSVHNKTKSYECDVCGKKFSQKDRLKHHTDSMHKSIIKKSFSQKSNLKTHIDSAHNSIKHKCDTCEKSFSFKSYLKNHIETIHNGKTSTCDICGKTFSQKGNLQNHIDSIHNGKTYACDICAKTFTQKSSLRTHINSVHYGEKSYECDVCGKKFSRKDNLKVHIHSRHNGIIYPCDFCRKTFSYKINLKTHINSVHNSEKSYECDVCGKKFSRKDVLKSHIDSVHLKVTHSCDKCGKAFAHKRNLKVHIESVHHKITHACDTCGKSFSCKIYLKKHIEAIHNGKAPTCHICKKTFSQKGNLQIHINSVHNSQKSNECDVCGKKFSRKDNLKVHIHSRHNGITYPCDFCRKTFSYKMNLKTHINSVHNSEKSYECDVCGKKFSRKDVLKSHIDSVHNNITYPCDVCGKAFIRKPSLRAHIDEVHNGKKPYKCDTCGRKFSRKYVLKTHTEIMHNGITYSRDYVERN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484873;
90% Identity: iTF_01484873;
80% Identity: iTF_01484873;