Tpre012105.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1199012-1201839[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.17 13 5.4 0.8 18 43 172 194 165 196 0.90 2 21 0.1 7.5 6.2 2.0 9 36 220 243 212 251 0.63 3 21 0.17 13 5.4 4.0 19 43 258 279 255 280 0.94 4 21 1.4 1.1e+02 2.5 0.2 19 43 286 307 283 308 0.81 5 21 0.033 2.4 7.7 2.1 14 44 309 336 297 336 0.79 6 21 0.054 4 7.0 1.1 19 43 342 363 339 364 0.94 7 21 0.00069 0.051 13.1 3.5 6 44 386 420 381 420 0.80 8 21 0.78 58 3.3 8.0 14 43 422 470 419 471 0.79 9 21 0.75 56 3.4 1.8 17 44 475 499 472 499 0.90 10 21 0.0077 0.58 9.7 0.3 18 43 504 526 500 527 0.85 11 21 0.024 1.8 8.2 0.4 18 43 532 554 528 555 0.92 12 21 0.00034 0.025 14.1 1.0 15 44 558 584 556 584 0.92 13 21 0.0017 0.12 11.9 0.4 19 44 590 612 587 612 0.94 14 21 0.0038 0.29 10.7 0.1 14 43 614 640 612 641 0.88 15 21 1.2 89 2.7 3.4 19 43 647 668 642 669 0.93 16 21 0.043 3.2 7.3 3.6 6 44 691 725 686 725 0.76 17 21 0.0016 0.12 11.9 4.7 14 44 727 754 719 754 0.89 18 21 0.0011 0.082 12.4 0.6 19 44 760 782 758 782 0.95 19 21 0.002 0.15 11.6 0.2 14 44 784 811 782 811 0.89 20 21 6.3 4.7e+02 0.4 0.0 19 43 817 838 815 839 0.80 21 21 0.4 30 4.2 2.0 7 33 834 862 829 867 0.75
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGAAATATTTAACTGTGATatgagAGTGAAACAAGAGCCAATCGACGTGTTGCTCGGTGAAAATGATTACATCGTAATCAACCAGACAGCCGAtgtcaacaattttcaattcctCAGGCATCCACGAGAAAATCGAATTCGCGTGCTTCGAAAATCTGACGATAATCACGAAAGTGAACTTGACGACTTGGCAATCGAGTTGGAATGTAAAGACATGAAGCCGAGCTTGGATTTATTAGCggttatgaaaattgaaaattgttctgAAGATCACTTGTCGGTTGGTGAAAATAGTAATGAATATcaacttcaaaaaataattaaaaaagaaaacgtcacgaatgtgaaaaaagaatttttcgacgacgtTCCGAAAGAATTTGATATGAATTCCAACCGCGGAGTCAGTGAgccaaataaaagaaaagcagttgtaaaaaagttgaacTATAATCATAAACTGAAAAGACGCTCTGGTACGGGACGTGGTAATATTACCCTTTCTTGTGAAACATGTGGAAAGGCATTCAGATATAAGAGCACTCTTAAAAATCACATCGACGCGGTGCATCATAAAATCACTCATGACTGTGCAGtatgtggaaagtcattcCAACTTAAAGATtctctcaaaaaacatattgaaGCGATACATAATGGTAAAACTCCGACATGCGATATCTGCGGAAAGACGTTCTCGCAAAAGGGCCATCTCCAAATCCACATCAACTCGGTACATAATGGTACAATCACCCATTCTTGTGATAcatgtggaaagtcatttaGACGTAAGAGCAATCTTAAAATGCACATCGAATCGGTGCACCATAAAATCACTTATGCCTGTGATATATGTGAAAAGTCATTCTCATTTAAAGATtctctcaaaaaacatattgaaGCGTTACATAATGGTAAAACTCCCACATGCGATATCTGCAAAAAGACGTTCTTTCAAATGAGTAATCTTCGCATCCACATCAACTCAGTACATAATAAGATCACTCGTGCCTGTGCTATATGTGGAAAGGCATTCAGATATAAGAGCACTCTTAAAATACACATCGAATCGGTGCACcataaaattactcatgcctgtgatacatgtggaaagtcattctcatgtaaaatttatctgaaaaaacACATTGAAGCAATACATAATGGTAAAGCTCCCACATGTCATATCTGCAAAAAGACGTTCTCTCAAATGAGTAATCTTCGcacccacatcgattcggttcataataaaacaaaaagttacGAATGTGACGTGTGTGGCAAGAAGTTCTCGCAAAAGGATCGTTTGAAACATCATACCGATTCGATGCATAAAAGCATCATCAAAAAgtcattttctcaaaaaagtaatttgaaaactcATATCGATTCGGCTCATAACAGTATCAAACATAAATGTGATACTTGTGAAAAGTCATTCTCATTCAAAAGTTatctaaaaaatcatattgaaACGATACATAATGGTAAAACTTCCACATGTGATATCTGTGGAAAGACGTTCTCTCAAAAGGGTAACCTCCAAAACCACATTGATTCGATACATAATGGTAAAACCTATGCATGCGATATCTGCGCAAAGACATTTACTCAAAAGAGTAGTCTCCGAACCCACATCAACTCGGTTCATTATGgtgaaaaaagttacgaatGTGACGTATGTGGCAAGAAGTTTTCGCGAAAGGATAATCTGAAAGTTCATATCCATTCAAGGCATAATGGTATCATATACCCGTGCGATTTTTGCAGAAAGACGTTTtcctataaaataaatttaaaaactcacaTCAATTCGGTACATAATAgtgaaaaaagttacgaatGTGACGTGTGTGGAAAGAAGTTCTCGCGAAAGGATGTTCTGAAAAGTcatatcgattcggtgcatctTAAAGTCACCCATAGTTGTGACAAATGTGGAAAGGCATTCGCACATAAGAGAAATCTCAAAGTTCACATCGAATCGGTGCACCATAAAATCACTCATGCCTGTGATAcatgtggaaagtcattctcatgtaaaatttatctgaaaaaacACATTGAAGCAATACATAATGGTAAAGCTCCCACATGTCATATCTGCAAAAAGACGTTCTCGCAAAAGGGTAATCTCCAAATCCACATCAACTCGGTTCATAATAGTCAAAAAAGTAACGAATGTGACGTATGTGGCAAGAAGTTTTCGCGAAAGGATAATCTGAAAGTTCATATCCATTCAAGGCATAATGGTATCACATACCCGTGCGATTTTTGCAGAAAGACGTTTTcctataaaatgaatttaaaaactcaCATCAATTCGGTACATAATAgtgaaaaaagttacgaatGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGATGTTCTGAAAAGTcatatcgattcggtgcataataacATCACTTATCCATGCGATGTATGCGGAAAGGCATTCATACGCAAACCCTCTCTGAGAGCTCACATTGATGAGGTGCATAATGGTAAAAAACCTTACAAATGTGACACGTGTGGCAGGAAATTCTCACGGAAGTATGTCCTCAAAACTCATACGGAAATAATGCATAATGGCATCACCTACTCACGTGATTATGTGGAAAGAAATTAA
- Protein Sequence
- MESSEIFNCDMRVKQEPIDVLLGENDYIVINQTADVNNFQFLRHPRENRIRVLRKSDDNHESELDDLAIELECKDMKPSLDLLAVMKIENCSEDHLSVGENSNEYQLQKIIKKENVTNVKKEFFDDVPKEFDMNSNRGVSEPNKRKAVVKKLNYNHKLKRRSGTGRGNITLSCETCGKAFRYKSTLKNHIDAVHHKITHDCAVCGKSFQLKDSLKKHIEAIHNGKTPTCDICGKTFSQKGHLQIHINSVHNGTITHSCDTCGKSFRRKSNLKMHIESVHHKITYACDICEKSFSFKDSLKKHIEALHNGKTPTCDICKKTFFQMSNLRIHINSVHNKITRACAICGKAFRYKSTLKIHIESVHHKITHACDTCGKSFSCKIYLKKHIEAIHNGKAPTCHICKKTFSQMSNLRTHIDSVHNKTKSYECDVCGKKFSQKDRLKHHTDSMHKSIIKKSFSQKSNLKTHIDSAHNSIKHKCDTCEKSFSFKSYLKNHIETIHNGKTSTCDICGKTFSQKGNLQNHIDSIHNGKTYACDICAKTFTQKSSLRTHINSVHYGEKSYECDVCGKKFSRKDNLKVHIHSRHNGIIYPCDFCRKTFSYKINLKTHINSVHNSEKSYECDVCGKKFSRKDVLKSHIDSVHLKVTHSCDKCGKAFAHKRNLKVHIESVHHKITHACDTCGKSFSCKIYLKKHIEAIHNGKAPTCHICKKTFSQKGNLQIHINSVHNSQKSNECDVCGKKFSRKDNLKVHIHSRHNGITYPCDFCRKTFSYKMNLKTHINSVHNSEKSYECDVCGKKFSRKDVLKSHIDSVHNNITYPCDVCGKAFIRKPSLRAHIDEVHNGKKPYKCDTCGRKFSRKYVLKTHTEIMHNGITYSRDYVERN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485034;
- 90% Identity
- iTF_01485034;
- 80% Identity
- iTF_01485034;