Tpre009108.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1915009-1918027[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1.3 8.6 1.5 14 38 133 154 127 160 0.78 2 13 0.017 1.2 8.6 2.5 18 43 165 187 152 188 0.90 3 13 0.001 0.075 12.6 0.6 17 44 192 216 189 216 0.91 4 13 3.2 2.4e+02 1.4 0.7 19 39 222 239 217 244 0.77 5 13 0.75 56 3.4 4.0 19 38 250 266 238 272 0.80 6 13 0.99 73 3.0 1.1 14 44 273 300 265 300 0.84 7 13 0.045 3.4 7.3 2.8 14 44 319 346 309 346 0.91 8 13 0.029 2.1 7.9 0.1 18 43 351 373 349 374 0.84 9 13 0.59 44 3.7 2.5 18 44 379 402 376 402 0.87 10 13 0.022 1.6 8.3 0.5 17 44 406 430 402 430 0.89 11 13 0.012 0.86 9.2 0.8 18 44 435 458 431 458 0.91 12 13 0.96 72 3.0 2.8 14 43 459 485 455 486 0.83 13 13 0.74 55 3.4 1.9 18 43 524 546 514 547 0.80
Sequence Information
- Coding Sequence
- ATGGAATCCAGTTTGTACTCCGTCagagtgaaagaagAAGAGCCTAGTAGTGATGATTCGTTTAGTGAAAATGATAGTGAAACTATTGATGAGAAACCCGATCTTGAAAACTTACATCTGTTTCAATTTCCAGCAGAAAATTCCgCGCTTCAACAGAGCAACGAGACTGATACCGAATTTGAGTGCGAAGACGTAAAGCccgatataaatttattagcATCAAATGAAAGTGGCGATGGTAATGCAACTCGAAACACAATCAATGCAGAACCCGCGGGTGACGCCGCAAAAGAATCAAATTCGAATTCCAGCTCCAAACTCGCccaggcaaataaaaaaaggagaatgaAAAGGAAGTTGCCTCTCTCCAAGCGTAAAGTCAGAAAAGGCGATGAGGATACAAGCGTCCAGTGTGAACAATGTGGAAAAACGTTTTCAAACGCGAGTAGTTGTAAAAGGCACGTTCTGTCGTTGCACGAACAGATTACCCACGCGTGTCACATATGCGGCAATAAGTTCTCGTTCAAGAGTAATCTCAAAGTGCACATGGACTCGGTGCACGGCAACTTCACCGTTTCTTGCAAAAAATGCGGCAAGTCATTCATGTACAAGTCGAATCTTCGTACGCACATCGACGAGGTGCACAACGGCAGCAGACACGCGTGCCATCTGTGTGGACAGACGTTCACGCAGAGAAACAATCTCCAACTGCACATCGACGCCATTCACAACAAGATCACTTATCCCTGTAAAATTTGCAAGAAGTCGTTCACGCAGAAGAGCACTCTGAGGCACCATACCGACGCTGTGCACGGCGACTCCAGCTACACCTGCGAGGTGTGCGGAGAGTCATTCCAGCAAAAGAAAAGTATCATAGAGCATCTCAAAGAGGAGCACAGCGATGTCAAACACGCGCGCATAAGAAAGAATTGCCTACAAACCGGCACGGGTACGGAGCGCAAGCACAAGTGCGGTGTGTGCCAAAAATCGTTCGCGAGGAAGTACAATCTCCAGAACCACGTGGAATCGGTGCACAGACCCGTCGTGCCCAAGTGCGACAAGTGCGGCAAGACGTTCGTCTACAAGTCCAGTTTGACGGCCCACATCAAAGCCATACACGGTGGCGTTTCGCACAAGTGCGGCATCTGCGGGAAGAGATTCAACATGCTGTGCAACCTCGACCGGCACGTCAAAGCCTTCCACAAAGGCGTCAATTTTACGTGCGACGCGTGCGGGAAGATATTCTCGCAAAAGAGGAGTCTTCGGAGTCACATCAGCGAGATGCATTCGGAAGGAGGCTTTACGTGCGATGGTTGTGGAAAGACATACAAAAATCAATCTAGTCTCTATAGACACATCACATCGTCGCACAGTAGCAATAACCTCGGatgcgatatttgcggaaaaaaatttttactccgATTTAACTATATCCGGCACATCAAAAAGGCGCACACAGGTATCCCCAGCGAGAATGGTGTTACTCGAGAGCCTGCGGGAAAAAGCAAAATTCCCGCAGAGTCCAGCCAAACTACACCGACCATCGACTCGGTGCATAAAGCTAGACATAATTGTAATGTATGCGGAGAAAAATTCTCAACGATGACTCGACTCAACGCCCACATCGATTTGGTACATCACTCGAGCAATGCATCACAATGA
- Protein Sequence
- MESSLYSVRVKEEEPSSDDSFSENDSETIDEKPDLENLHLFQFPAENSALQQSNETDTEFECEDVKPDINLLASNESGDGNATRNTINAEPAGDAAKESNSNSSSKLAQANKKRRMKRKLPLSKRKVRKGDEDTSVQCEQCGKTFSNASSCKRHVLSLHEQITHACHICGNKFSFKSNLKVHMDSVHGNFTVSCKKCGKSFMYKSNLRTHIDEVHNGSRHACHLCGQTFTQRNNLQLHIDAIHNKITYPCKICKKSFTQKSTLRHHTDAVHGDSSYTCEVCGESFQQKKSIIEHLKEEHSDVKHARIRKNCLQTGTGTERKHKCGVCQKSFARKYNLQNHVESVHRPVVPKCDKCGKTFVYKSSLTAHIKAIHGGVSHKCGICGKRFNMLCNLDRHVKAFHKGVNFTCDACGKIFSQKRSLRSHISEMHSEGGFTCDGCGKTYKNQSSLYRHITSSHSSNNLGCDICGKKFLLRFNYIRHIKKAHTGIPSENGVTREPAGKSKIPAESSQTTPTIDSVHKARHNCNVCGEKFSTMTRLNAHIDLVHHSSNASQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01481732;
- 90% Identity
- iTF_01485182;
- 80% Identity
- iTF_01485182;