Tbra001827.1
Basic Information
- Insect
- Trichogramma brassicae
- Gene Symbol
- -
- Assembly
- GCA_902806795.1
- Location
- CADCXV010000335.1:1721485-1723477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.1e-05 0.00046 20.4 0.2 2 23 140 162 139 162 0.95 2 13 7.6e-06 0.00032 20.9 1.9 1 23 167 190 167 190 0.95 3 13 2.6e-06 0.00011 22.3 0.6 2 23 196 218 195 218 0.92 4 13 1.1e-05 0.00049 20.3 2.2 1 23 223 246 223 246 0.94 5 13 1.7e-06 7.3e-05 22.9 2.5 1 23 251 274 251 274 0.91 6 13 8.2e-05 0.0035 17.6 0.8 1 23 279 302 279 302 0.96 7 13 1.9e-06 8.2e-05 22.8 1.9 1 23 325 348 325 348 0.95 8 13 6.3e-06 0.00027 21.1 2.1 1 23 353 376 353 376 0.96 9 13 0.00012 0.005 17.1 2.7 1 23 381 404 381 404 0.95 10 13 1.1e-05 0.00049 20.3 0.5 1 23 409 432 409 432 0.94 11 13 6.2e-07 2.6e-05 24.3 1.5 1 23 437 460 437 460 0.96 12 13 0.0021 0.091 13.2 0.4 3 23 467 488 467 488 0.98 13 13 0.00033 0.014 15.7 0.6 1 23 526 549 526 549 0.92
Sequence Information
- Coding Sequence
- ATGGAATCCAGTAGTTTGAACTCCGTCagagtgaaaCAGGAGCTTGATGATGCGTCGTTTAGTGAAAATGATAGTGAAATTGAAGATGAGAAACCCGATCTCGAAAACTTACAACTGTTACAATTTCCGGGAGAAAATTCCgTGCTTCAAGAGAGCAACGAGACGGATACAGAATTTGAGTGCGAAGACGTGAAGCccgatataaatttattagcAGCAAATGAAACTGGCGATCCTTCTTCAAATAACTTGCAAAATGTAGAAGGCAGCGATGGTAATGCAACTCGTGACGCCGCAAAAGAATCGAATTCGAATTCCAACTCCAATCTTGCCAAAGCAAATAAAAGAAggggaaagaaaaagaagctgcATCTCTCCCAGCGTAAAGTCAGAAAAGGCGATAAGGATACAAGCGTCCCGTGCGAACAGTgcggaaaaacattttcaaacgcGAGCAGTCGAAAAAGGCACGTCCTGTCGGCTCACGAACAGATCACCCACTCGTGTCAAATATGCGGCAATAAGTTCTCGTtcaagagtaatctcaaagtGCACATGGACTCGGTGCACGGCAATTTCAGCGTTTCTTGCACAAAATGCGGCAAGTCGTTCATGTACAAGTCGAATCTTCGTACGCACATCGACGAGGTGCACAACGGCAGCAGACACGCGTGCCACTTGTGCGGCCAGACGTTCACGCAGAGGAACAATCTCCAACTGCACATCGACTCCATTCACAACAAGATCACTTATCCCTGTAAAATTTGCAAGAAGTCGTTCACGCAGAAGAGCACTCTCAGGCATCACACCGACGCGGTGCACGGCGACGTCAGCTACACCTGCGAGGTGTGCGGAAAGAGTTTCCAGCACCGCAACAGTATCATAGAGCACATCAAGGAGGAGCACGGCGAGGTCAAACACGCGCGCATAAGAAAGAATTGCCTGCAAACCGGCTCGGGCACGGAGCGCAAGCACAAGTGCGGTGTGTGCAAAAAATCGTTCGCGAGGAAGTACAATCTCCAGAACCACGTGGAGTCGGTGCACAGACCCGTCCCGCACAAGTGCGACAGGTGCAGCAAGTCGTTCGTCTACAAGTCCAGTCTGAAGGCCCACATCAAGGCGATACACGGCGGCGTCACGCACAAGTGCGGCATCTGCGGGAAGACGTTTAACATGGCGTGCAACCTCGACCGGCACGTCAAAGCTTACCACAAAGGCGTCAATTTTACGTGCGACGCGTGCGGAAAGATATTCTCGCAAAAGAGGAGCCTTCGGAGTCACATCAGCGAGATGCATACGGAAGGAGGGTTCACGTGCGACGGTTGTGGAAAGAGATACAAAAATCAATCTAGTCTCTATAGACACATCACATCGTCGCACAGTAACAATACCCTCGGAtgcgatatttgcggaaaagtatttttactcCGATTTAACTATATCCGGCACATCAAAAAGGCGCACACGGGTGTACCCGGCGAAAATGGCGTTCATCGAGAGCCTGCGGGAAAAAGCAACATTCCCGCAGAGTCCAGCCAAACGACACCTACCATTGACTCGGTGCACAAAGCTAGACATAATTGCGAAGAATGCGGAGAAAAATTCTCAACGATGACTCGTCTCAAGGCACACATCGATTTGGTACATAACTCGAGCAATGCATCACAATGA
- Protein Sequence
- MESSSLNSVRVKQELDDASFSENDSEIEDEKPDLENLQLLQFPGENSVLQESNETDTEFECEDVKPDINLLAANETGDPSSNNLQNVEGSDGNATRDAAKESNSNSNSNLAKANKRRGKKKKLHLSQRKVRKGDKDTSVPCEQCGKTFSNASSRKRHVLSAHEQITHSCQICGNKFSFKSNLKVHMDSVHGNFSVSCTKCGKSFMYKSNLRTHIDEVHNGSRHACHLCGQTFTQRNNLQLHIDSIHNKITYPCKICKKSFTQKSTLRHHTDAVHGDVSYTCEVCGKSFQHRNSIIEHIKEEHGEVKHARIRKNCLQTGSGTERKHKCGVCKKSFARKYNLQNHVESVHRPVPHKCDRCSKSFVYKSSLKAHIKAIHGGVTHKCGICGKTFNMACNLDRHVKAYHKGVNFTCDACGKIFSQKRSLRSHISEMHTEGGFTCDGCGKRYKNQSSLYRHITSSHSNNTLGCDICGKVFLLRFNYIRHIKKAHTGVPGENGVHREPAGKSNIPAESSQTTPTIDSVHKARHNCEECGEKFSTMTRLKAHIDLVHNSSNASQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482742; iTF_01482889; iTF_01484991; iTF_01485182;
- 90% Identity
- -
- 80% Identity
- -