Tpre007524.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- egg
- Assembly
- GCA_000599845.3
- Location
- NW:1028506-1033962[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.35 1.4e+03 -1.6 0.0 38 56 262 280 259 293 0.86 2 2 8.8e-13 3.7e-09 35.6 0.0 5 70 622 681 619 687 0.87
Sequence Information
- Coding Sequence
- ATGGCTACATCAAAGGTAACTGAAGTTATCAACTTAGATTCTGACGACGATAATGCCgcaaatgaagagaaaaagacaaaTGCAAAATGTATCAACTTTGAATGTAACTCTGGTAATAAATTAAAGCTCAAGTCTCCACCACCATTTGCTTGTGCGTTTTATGGCGTTAAcaataatgcaaaaaagaagCTTTATATTTGCCAAGAATGTCTAAATACTGCTTTAGAACATCAAgatAAACTTATCCAAGCTTTATTAAACTCAGAACCAGTCGTTAAGTATGAACTTCCAGATCATACCATGCAAGTGGAAATTTCAGACAGTGATGATTCAGATAACGATACAATTCAAAagGACTGTCTATCCATTGTGGAATTGTCtcaattcaaagaaaaattgactAATACTTATGAAGAAGTATTTAAGACTTATAACATTGACTATCAAATAAGAGAAACTCATTctgatttaaaatcaaaattagatgaaatcaatgCTTCTAATAAAGAGATGGAGgaacaattttcaacaattatgGGCAATTTAGATGATTATAGAAGACAACTTTACGATGAGTTTAAGCCTGACATAAAAATGTTGGAAGAATTGACCATCAATGACGATAATGCAACTACCAATACTTCATCATCTGCACAAGTTGCTACTAAAAAAGTTACACGTGGTCAATGTTCAAATCTATCAAATTCTAATGTGGATAGTCAACCTGAAATTCTTCAAGTAGCAGCACCAAGCAATAAACTTCTGGGGACAATGAATTTACCCCCTACAGGCCAATTAATAAAACCTGTACCAGAAATTGATGAGTATGTTTTCACAATGAAGCATCCTCTGTTTCCATGGATCAAAGGAAAgGTTCAACAGATCTCAAATAAGTCTCCAATGCAGTACAAAGTAAAattgctgcaaaaaaaatatgctggTCAAATAAAAACTCTGAGTGGAAAACATATGGCATATAGTAAACCAAGTCCAGTTATCATACCTGTAGGTACTAGAGTTGTAGCTATATTTCAAGACACATATTCAAGTAATTATTACAGTGGAGTTATTGCTGAACCACCCAAGTCTACAAATTTATTTAGataCTTGGTATTTTTTGACGATGGCTATGCTCAATATGTATATCACAGacatatatttttagtttGTGAAAGTTCACGAAATGTCTGGGAAGATATACCTCTTGAATCTAGAgattttgttaaaaagtacATGGAATCTTATCCAGAGAGACCAATGGTAAAACTCCAAAAGGGTCAAGTAGTTAAAACTGAATGGAATGGAAAATGGTGGATAGCTAGAGTACGGGAAGTGGATGCTAGTTTAGTGCAAATGCATTTTGATGCTGATAATAGAACAGAATGGATTTATCGTGGGTCTGCAAGATTGGGACCATTATATGTGGAACTTATGAAAGCAAATCTTCGACAACAAGGTTGTCATTCTTCTCTTAACACACCAAGACGCCATAACACTATTATTAATAAAAATGGACCATATGTTGAATATACATCTACAGCTACTGATGAACGAGACGCTTTCATAAATGACACAAAATCTAAACATTCAGGGACCGTTAATAACACTTTAGTTGAATCTGTTGCACCCCAACAGGCTCGAGCAGTTGCTAAAAAAAGTACTGCCAAGCGTTCTATTACACAAGAAACTACTTCTACTTCTATTTCAACTACTTATAGCACCAATACAGAAACAAAGCCATCTCACAGTATTGTTTATTATCaaacacaaaataaaattcagacgaaaaaatataaaattcataactGCAGTCCGGAGTGTGTTAAAGCAATATCGTTTACACCTGATGATTTACGTGGTTATTCGCCATTGTCCATACCACTACTATGTGGATGGAATAGACAACTTTGTAGATTCCCCAAGGGAAAACAAGTTATACTATATCAGGCCCCTTGTGGTGTTAGGCTGAGAAATATGGAAGAACTGCATAAATATCTCAGAATTACTGGCTGCCCAATGTCTGtagatttatttgaatttgattattGGGTTCATTGCTTAGCTGAGTTTGTCTTGGATAAATGCTTCGTAAATATTAAGGATCTTAGTTATGGAGTTGAAAATGTTCCCATTCCTTGTGTCAATGAAATTGACCATGCCTTTCCAGATGCCATTACGTACGCAACTCGGCGTCAACCTGAGGACGATGTACACATAAATTTAGATCCAGAGTTTTTATGTAGTTGTGATTGTGAAGATGATTGTGCTGACAAGACCAAATGTCAGTGTTGGCAATTGACCATACAAGGCGCTACCCTTGGAGGACGTGTGCCAAATGCTGCTGttggatatgtatataaacgtttACCTGAAGCTGTTACTACTGGCATATACGAGTGCAATTCACGatgcAAATGTTCGGTTAAAACTTGTTTAAATCGAGTAGTCCAACATCCACTTAATTTGAAACTTCAAGTCTTCAAAACAGCACCCCGTGGGTGGGGTATTCGTTGTCTAAATGATATTCCTTTAGGATCATTTATATGCATTTATGCTGGCCGTTTATTGACCGAGCAAGGTGCTAATGAAGGGGGTAAAAATTATGGAGATGAATATCTTGCAGAATTGGATTATGTTGAAGTTGTTGAGAGTATTAAAGAAGGCTATGAAAGTGATGCTCTGGAACCTGAAATGGAAGGTAATGCTGGTAATGATGACATAACTGATACAGATTTTAATATATCTGCTCATAAAATGCAAGAAGATAATGTAGATTCAGCTAATGCATCAGAAGATGAGGATTCCAGATCATCAATGCGAAGACgattaagaaaaagaaagaagtatGATGAAGATAATGCCTCAAAGGATAGTCAAGAAAAAGGAAGCGATGAAGAAGATCAAGATGAGATTCGTGAACCAAGTAAATTAGATTTAGCTGTAGATACAACAAAGGTAGAGAAaccaaaattcaaatcagtTCGTGATTTCTTTGGTGAAGATGAATCAGTATACATTATGGATGCTAAGACAACTGGCAATATCGGAAGATATTTAAACCACTCTTGTGATCCAAACGTGTTTGTGCAAAATGTATTTGTTGATACCCATGATGTAAGGTTTCCATGGGTAgctttttttgcattgaaCTATATTCGAGCTGGTCAAGAATTGACATGGAATTACAGTTATGATGTAGGTAGCATACCTGgaaaagtaattatttgtaaatgtgGAGCAAGTAACTGCAGAGGAAGACTTTTATAA
- Protein Sequence
- MATSKVTEVINLDSDDDNAANEEKKTNAKCINFECNSGNKLKLKSPPPFACAFYGVNNNAKKKLYICQECLNTALEHQDKLIQALLNSEPVVKYELPDHTMQVEISDSDDSDNDTIQKDCLSIVELSQFKEKLTNTYEEVFKTYNIDYQIRETHSDLKSKLDEINASNKEMEEQFSTIMGNLDDYRRQLYDEFKPDIKMLEELTINDDNATTNTSSSAQVATKKVTRGQCSNLSNSNVDSQPEILQVAAPSNKLLGTMNLPPTGQLIKPVPEIDEYVFTMKHPLFPWIKGKVQQISNKSPMQYKVKLLQKKYAGQIKTLSGKHMAYSKPSPVIIPVGTRVVAIFQDTYSSNYYSGVIAEPPKSTNLFRYLVFFDDGYAQYVYHRHIFLVCESSRNVWEDIPLESRDFVKKYMESYPERPMVKLQKGQVVKTEWNGKWWIARVREVDASLVQMHFDADNRTEWIYRGSARLGPLYVELMKANLRQQGCHSSLNTPRRHNTIINKNGPYVEYTSTATDERDAFINDTKSKHSGTVNNTLVESVAPQQARAVAKKSTAKRSITQETTSTSISTTYSTNTETKPSHSIVYYQTQNKIQTKKYKIHNCSPECVKAISFTPDDLRGYSPLSIPLLCGWNRQLCRFPKGKQVILYQAPCGVRLRNMEELHKYLRITGCPMSVDLFEFDYWVHCLAEFVLDKCFVNIKDLSYGVENVPIPCVNEIDHAFPDAITYATRRQPEDDVHINLDPEFLCSCDCEDDCADKTKCQCWQLTIQGATLGGRVPNAAVGYVYKRLPEAVTTGIYECNSRCKCSVKTCLNRVVQHPLNLKLQVFKTAPRGWGIRCLNDIPLGSFICIYAGRLLTEQGANEGGKNYGDEYLAELDYVEVVESIKEGYESDALEPEMEGNAGNDDITDTDFNISAHKMQEDNVDSANASEDEDSRSSMRRRLRKRKKYDEDNASKDSQEKGSDEEDQDEIREPSKLDLAVDTTKVEKPKFKSVRDFFGEDESVYIMDAKTTGNIGRYLNHSCDPNVFVQNVFVDTHDVRFPWVAFFALNYIRAGQELTWNYSYDVGSIPGKVIICKCGASNCRGRLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482397;
- 90% Identity
- iTF_01482397;
- 80% Identity
- -