Tpre002184.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma pretiosum
Gene Symbol
tfip11
Assembly
GCA_000599845.3
Location
NW:1022120-1025921[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.2e-90 7.5e-87 290.9 20.7 1 275 386 652 386 652 0.98
2 2 0.015 92 2.0 0.0 157 190 664 696 657 706 0.63

Sequence Information

Coding Sequence
atggCTGAAGATATGGAGAAATTCGAGATTTCCGATTATGATTTGGAAAACGAGTTCAACATCAATCGTCCTCGAAGAAAATACACGAAAGCTCAGCAAATGTTAGGAGTTTGGGCCGATAGTGACAGTGATGATGAACCAGCAAGGCCATCATTCAAAAGGCAAGGTAAAAAAGATTATTCTGCTCCAATTAGTTTCATTACTGGAGGAGTACAACAAGCTGGACAGtcaaaaaagcagaaaatgGATATTTCAGAtgatgaagaagatgaagatgcCCAGGATAATAACAAAATCAAAGACAGTTCTAGtgAATCTGAAAATGAAAGGCCATCTTTTTCTGGAGCAAAATCTACatcaacttttaattttcaaccaGATGATATTGCTGGTTTGAGAAAAAAGCGAAATCCAATTAATACAGATGTCATGAGACAAGGTTTGGGTACCTGGGAGCAGCACACAAAAGGAATTGGAGCTAAGCTGCTTCTTCAGATGGGTTATCAACCAGGCAAAGGCTTGGGTAAAGATCTACAAGGTATTGCTGCTCCAGTAGAGGCCAAACTGCGTAAAGGTAGAGGAGCCATCGGTGCCTATGGACCAGAAAAAGTAGCAAAAATAGCTGATACAAAAGCAAGCATTGAAGAGAGCGAAgctaaaaaatcaaaacaagcCAAGAGCTcacaatggaaaaaaagcaacaaaaaatcaaattactcTGTCAAAAGTGTGGATGAAATAATAGAAGatggaagaaaaacaaatagaaAAGTACCTACAATTGATACAAACATTGTTAAATGTAATGTTATTGACATGACCAAACCAGAAAAGAAAACTTTCAGTGGGTATCAACATGCTCTAGGAAAGCGACAAGAACAACCAGATGAAAATGTTGTAACTGATGATAAAACAAAAGCAGTTTTCACTTTAACAGAATTACAGCATAATTTGGATACATTGGTTGACATGTGCGAACAAAATATAATCCAAATTGACAGACGCAAAACTTATTCAAGTGACAGAATTATTTGTTTAAACTCTGAAAAAGAGACATTAATTAAAGTTCGTGATCAACACGCACATTTGATCGGAACATTAGAAAATGTTTTAGCTACTGTAAATAAGTTAGTAGAAAGAAATAGTGAAATGAATTTGAAGGAAACTGCAGAGGCCTTTAAGTATCTACAAGATAGACACTTTGACGAGTATAAGGCATTTAGATTAGGAGATCTGGCATGTACATTTATATCACCAAAATTCAAAGAATATCTTTCCCTTTGGAGCCCATTGTTACAGCCCAACTTACCACTATCTTTATTTGAAgaatggaaagaaattttacaaaatggaGCCCTTTATGATCAGAGACGATCTATGGCTCCTTATGATCAGCTAGTTTGGAATTCATGGATGCCACCTGTACGAATTGCAATACAgAATTGGATCTGTCGCCAACCGGAAAATTTGGTTGATTTGATAGAAATGTGGGCCCCCATTCTACCTTACTGGATTATGGAAAATCTCTTAGAGATTATCTTGCGAAAATTAACGAACGAAGTAGAAGAATGGAACCCTGTCACGGACACTGTACCGATTCATACATGGATTCATCCATGGTTGCCATTGATGAAGAACAAAATGGATACTGAAATTTATCCAATAATTAGGAGAAAATTAGGGAACGCTCTTACAGCATGGCATCCCTCAGATCACTCAGCAAAGTCCATTTTGCAACCATGGGTGTCTGTTTTCGCAAAAGGCGATTTGGACGCTTTTCTGGTCAAACATATTTTACCGAAGCTTCAACAAGTTCTTCAAGCTTTTGTTATTAATCCTCATTCACAAATGTTAGAACAATGGCATTGGGTGTATGACTGGAAAGATCTAATACCGAATCATATAATGGCATCAATGCTTGATAAATTCTTCTTCCCAAAGTGGTTACAAGTTTTGGGAATATGGTTAAATCATTCTCCAAATTACGAGCAAGTTACCAACTGGTACACaggttggaaaaaaatgttaagcgATAAACTTCTTGCTGAGCCCATAATCAAAgAGCACTTTAGAAGAGCACTCGATATGATGAATAGATCGGTATCAACTCCGCAAGGTGATTTGCTGCCAGGATCCGTAGAGCAAGTTTCTTATTTGATGAATTTAGAGCGCACTCAAGCTCAAAGTGCTAAAGTATCGCAAATGTCTCAACCTAGAATAGAGAGATTAGCAGAGGCTGTCAGGAGCGCGTCGCAGGTGCCGCAAGGTTTCAAAGATCTAGTCCAAAAACGTTGCGAAGAACGAGGAATCTTGTTTATGCCTCTTGTAAATAGATACCGTGACGGAAAACAAATATACAAAGTCGGAAATATTCAAGCATTCATAGATGGCGATTGCATATTTACGTGTCACAACGGCTCGTCTTGGCTACCCACGAATTTGAGTACTCTATTAGACACAGCCGAAATAAGTTGa
Protein Sequence
MAEDMEKFEISDYDLENEFNINRPRRKYTKAQQMLGVWADSDSDDEPARPSFKRQGKKDYSAPISFITGGVQQAGQSKKQKMDISDDEEDEDAQDNNKIKDSSSESENERPSFSGAKSTSTFNFQPDDIAGLRKKRNPINTDVMRQGLGTWEQHTKGIGAKLLLQMGYQPGKGLGKDLQGIAAPVEAKLRKGRGAIGAYGPEKVAKIADTKASIEESEAKKSKQAKSSQWKKSNKKSNYSVKSVDEIIEDGRKTNRKVPTIDTNIVKCNVIDMTKPEKKTFSGYQHALGKRQEQPDENVVTDDKTKAVFTLTELQHNLDTLVDMCEQNIIQIDRRKTYSSDRIICLNSEKETLIKVRDQHAHLIGTLENVLATVNKLVERNSEMNLKETAEAFKYLQDRHFDEYKAFRLGDLACTFISPKFKEYLSLWSPLLQPNLPLSLFEEWKEILQNGALYDQRRSMAPYDQLVWNSWMPPVRIAIQNWICRQPENLVDLIEMWAPILPYWIMENLLEIILRKLTNEVEEWNPVTDTVPIHTWIHPWLPLMKNKMDTEIYPIIRRKLGNALTAWHPSDHSAKSILQPWVSVFAKGDLDAFLVKHILPKLQQVLQAFVINPHSQMLEQWHWVYDWKDLIPNHIMASMLDKFFFPKWLQVLGIWLNHSPNYEQVTNWYTGWKKMLSDKLLAEPIIKEHFRRALDMMNRSVSTPQGDLLPGSVEQVSYLMNLERTQAQSAKVSQMSQPRIERLAEAVRSASQVPQGFKDLVQKRCEERGILFMPLVNRYRDGKQIYKVGNIQAFIDGDCIFTCHNGSSWLPTNLSTLLDTAEIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01483861;
90% Identity
iTF_01483861;
80% Identity
-