Tpre010276.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:105563-108172[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-05 0.017 14.3 0.0 7 38 158 189 156 194 0.92 2 2 0.00026 0.23 10.7 0.0 4 42 636 674 634 676 0.92
Sequence Information
- Coding Sequence
- atgtcggACGACAAGAGGCGGCGGCGCTCGAGGCCGCCGATCTTCACCGAGAGGGAGGAGAAGCAACTGGTGCACTACATGAACGCGCGCTCGGCCATGGAGAACGGCATAGGTCGCGCGCGAATGCGCCGTATCGCCTATCAGTACGCCGTGGCGAAGAGACTGAGGTACCCGGCGAGCTGGGACGAGGCCCAGCAGGCCGGTCTCACCTGGCTGCGCAGCTTCACCTCCAAGAATCGCCGGAAGCTGACGATCAAGCCGGAAGAGCTGTTGGCGGCGCGCGACAAAGAGGCCGACTCGTCcttcgacgaggacgaggagctCGAGGGCTTCGATCCGTTCGAGGACGTCGTCGTGATACACGAGGAGGACGAACCagaggaagaggaggacgaagaagaaaaggagcCAGCGGAGAAGAGGAGGCGCGTAGGCAGAAGGAAAAAGGAGGTGGATAGGAGCGTCGTGCTGCGGGCCATCGAGGACGTGACGAGCAAGAGGCTGAACTTGCGCGAGGCCGCGCGCCTCCACGACGTCGCGCTCGCCACGCTACATCTGCATCTGCGCATCTATCGTGGCGCGGGTGGCTCGGCCGAGGCGTATCTCAGCCGGACGTTAGACCGCAGACGCGGTTTCGCCGCTCGCGACGAGTCGGCCATCGTCGAGCACGTGAATCGCTGCGCCGACGCGGAGGGCTGCCGCCTCGGCAGAAAACGCGCCCGGCGCCTGGTCTACGAGTTCGTACGCGCTCAAGGCTTGAAGTATCCCAAGGGCTGGGACGAGCGAGAGATCGCCTCGACCAGCTGGATGATGGGTTTCATCGTTAAGCACGGCCGAGAGTTGCGACTGGACGAGAAGGCGTTGAAAATTGGCTCGCTGACTTCGAAAGATAACACTGAAGGTGTGGAAGAAGATGCACTTGACGAAGTCGAGGCAGATTCCGAGAGCTGCTCGGTCGGCAACGAATACGTCGACGGCATAAACGACAGCTACTTGTTGAACGAGGACGATGCCTCGGAATCTTTTCCGTTCGATTGTCAATACAACGAGGAAAAAGGAGTCGCGATCGAGGAGGTCGTCATCGCGCCGAGTAAAGccagcgacgacgaggaagtTATCGAGAGCTACGATGCGATGGAAGAGGAACCAGAGGCAGAGGAAAAAGAATACGATGCCAAAGAAGAGGAGAGGATGGTCGACGAAGAAGAGGAAATAGCCCGATACGATCGCGAAGAAGAAACAAACACCAAAGTCGAGAACGTGAAAATGGTACGAACTTTTTATCACTTTCCCGACATGGTTTACGAGACTTTCGAGCCGGTAGGCGACGttaacgataataattgtGATATCGTTGAGGACGAATGCTCGGAGTACAGTGATGATTGCGTCGACGTTACCGAAGATCGTTTACTCGATGACAGTATTAACGACAATTATGTCGAAATTACGAACGAGCACCAAGCCAAAAAACAGGAGATCAACGCCAATTACGTGGTTGAGCTCAACCATAACGATGTAGAAATTATTAATGTCTCGAGCGACGCTGCCTCTAGTCCTGAAccctcgaaaaaaatcttcacCGACGAGGAAGAGTCGCAGCTGGTCGATTATATCAATTCAGCCTACTGCCGAGAACCCGAGCTCACTCTGCTCACACTCAAGCAAGCGAAAAAGCTGACCTACGAGTACGCGACCAAACAGATACGCAAGTACAGCCGGGTGTACGACGCCTGGCGCGCCTTCGACACCGCGTGGATGAGGCAGTTCTACGCGAGGCATCGCGAGGACTTGGCGACGACGCTGGATCCTCGCGAGTTCGAGGCgaacggcggcgacgacgagaaagCAAATGGTTACAAAGGCAAAAAGCTGAAGCCCGGCAAGTACGTGTACGACGTGGCGAATCTCCACAAGGCCCTGGACGGCATCGTGGCGGGCGACTGGAGCGTCAAGGAGGGCTCGGATCTGTTCAACATAGCGCCCGCGACGCTGCAGCATCACAAGCGCCTTACCGAGCAGCAACAGAGCAGCAACTCATCGTGCCTCGGCAAAGCCGAGACGAATTACGAGCTGCACAGGATCTGGAGCGACGAGCAGGAGCGCGACCTCGTGACGCACCTAAACAAGATGGCACGCGCCGAGGGCGGCCTGACCAGAAAGCGATACCGCAAGGAGATCTACGCTTACGCGAAGAAGACGCCAGGTACGCGGTATCCGCGCGCTTGGGACATGCTCGACATGGCGAGCTCGTACTGGACCCAGGGTTTCTTGAAGAAGCACAAGGACAGACTGTGTCTCAGCTGGCCGGTCAAAGTGATAAAGAGTCATTGA
- Protein Sequence
- MSDDKRRRRSRPPIFTEREEKQLVHYMNARSAMENGIGRARMRRIAYQYAVAKRLRYPASWDEAQQAGLTWLRSFTSKNRRKLTIKPEELLAARDKEADSSFDEDEELEGFDPFEDVVVIHEEDEPEEEEDEEEKEPAEKRRRVGRRKKEVDRSVVLRAIEDVTSKRLNLREAARLHDVALATLHLHLRIYRGAGGSAEAYLSRTLDRRRGFAARDESAIVEHVNRCADAEGCRLGRKRARRLVYEFVRAQGLKYPKGWDEREIASTSWMMGFIVKHGRELRLDEKALKIGSLTSKDNTEGVEEDALDEVEADSESCSVGNEYVDGINDSYLLNEDDASESFPFDCQYNEEKGVAIEEVVIAPSKASDDEEVIESYDAMEEEPEAEEKEYDAKEEERMVDEEEEIARYDREEETNTKVENVKMVRTFYHFPDMVYETFEPVGDVNDNNCDIVEDECSEYSDDCVDVTEDRLLDDSINDNYVEITNEHQAKKQEINANYVVELNHNDVEIINVSSDAASSPEPSKKIFTDEEESQLVDYINSAYCREPELTLLTLKQAKKLTYEYATKQIRKYSRVYDAWRAFDTAWMRQFYARHREDLATTLDPREFEANGGDDEKANGYKGKKLKPGKYVYDVANLHKALDGIVAGDWSVKEGSDLFNIAPATLQHHKRLTEQQQSSNSSCLGKAETNYELHRIWSDEQERDLVTHLNKMARAEGGLTRKRYRKEIYAYAKKTPGTRYPRAWDMLDMASSYWTQGFLKKHKDRLCLSWPVKVIKSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482317;
- 90% Identity
- -
- 80% Identity
- -