Teva007716.1
Basic Information
- Insect
- Trichogramma evanescens
- Gene Symbol
- -
- Assembly
- GCA_902732785.1
- Location
- CACVKI010141663.1:27298-30245[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 1.4 9.7 0.1 1 20 73 92 73 94 0.94 2 17 0.00023 0.02 15.5 0.1 1 20 110 129 110 131 0.94 3 17 0.0039 0.33 11.6 0.4 2 23 147 169 146 169 0.90 4 17 0.0041 0.35 11.5 0.2 3 23 175 196 174 196 0.96 5 17 0.00027 0.023 15.2 1.3 1 23 202 224 202 224 0.96 6 17 3.2e-05 0.0027 18.2 2.9 2 23 232 254 231 254 0.94 7 17 0.0046 0.39 11.4 1.8 1 23 278 300 278 300 0.98 8 17 0.0011 0.091 13.4 0.7 2 23 307 327 306 327 0.97 9 17 0.00051 0.043 14.4 0.2 1 23 331 353 331 353 0.98 10 17 0.00096 0.081 13.5 1.7 1 23 459 481 459 481 0.97 11 17 2.8 2.4e+02 2.6 0.1 1 23 486 509 486 509 0.73 12 17 0.013 1.1 10.0 3.1 2 21 515 534 514 536 0.92 13 17 9.8e-05 0.0082 16.6 3.5 1 23 544 566 544 566 0.96 14 17 3.2e-05 0.0027 18.2 0.3 1 23 579 601 579 601 0.98 15 17 6.6 5.5e+02 1.5 0.1 2 8 608 614 607 621 0.88 16 17 3.2e-05 0.0027 18.2 0.9 3 23 636 656 634 656 0.96 17 17 7.7e-06 0.00065 20.1 1.2 1 23 662 684 662 684 0.98
Sequence Information
- Coding Sequence
- atgataataaatatacatggTCAAAAAGTCGAAGAGAAGAAGCTAATCCCGCGAAATCGAGTCAATAAATCTTTGGATAAAAGCGGTGGTCAATCAATCGTACGTCGCACCGTTAAGACTGACGTTAAAAAATCCAAACCAGCGAAAAACGACTCGACTCCTCGATTTGTAGAGAACGTTCcggaaatgataaaaaattacgttAACGGCCCCCCATACGAGTGCGATTCGTGCGACGACACGTACGAAGACCAAAAGAACTTGACCATTCACAAGATGGAGAGATCgatcgtgcgcgcgagagagcaatTCAAAACGAGAAACTCGCACGTCTGCAGCGTCTGCGGCTCCGCGTTCAAGACCAGCTCGGAGCTGGTCGCGCATTACGAGTACTGTCGATCGGGCCACCAGACAAGAGCTCAGCAGCTGTGGTCGGTCGTCTGCGAGATATGCAATCGCAAGTTCAAAGACTTGAAGTCCCAAAAGGCGCACAAGGCCTGGTCGCATTCGATCAACATCCTCTGCCCGCTGTGCGACAAGCAATTGAGCTCTACGAAGGAGCTGTTGGCGCATCAAACGAGCGTACACGCGAAAGAGTCGAGGCACTCATGCAGGTATTGCGGCAAGAGCTTCGACGAACTTCTGTCGCTCCAGGCTCACGTGTCCCGTCACGAGGGTAAAAATGGCCCGGTGTCCTGCTCGTATTGCGATAAGATTTTCAGGCACGAGCATTATCTCAAGAGGCACGTGGAATCCGTACACCAAGATCCAGGAAGGATGGTTGTCCTCAAAACGAGTaatctaagaaaaaagaacaaagaaattaaaatgtacAAGTGCGAGATTTGCGAGTACGAGACGAAAAGGAGGAGTTTTTTCCTGATGCATGCCAACAAGCATAATACACCTGAAAGAAAAGAGTGCGAActttgtggaaaaaaattgcgacccaaatatttcaatatacaTATGAGAATTCACATGGACGATTTTAAGTGCGATAAATGCGGAAAAATCGTTAACGGAAAGAGCAAAATTGTCCAGCATATGGCTATGCACGGCGTTGACCAGAAAGATGTGTTGAGCGCAGTCGGCTCAGAAAAACTCTCGATACGTAGTCGGACTGATGTTGCCGAACCACCTCGAAAGATCCAAAGGGTTGTAAAAGACGAAAACTCCTTGATAATTCCCGAAGAGCATAATTACTCTCATCGAGTTGGTTCAGAAAGTCTCTCGGTTTCTGGAGAGATCCAATGCGCTACCATAGGTGGTCAAGTGacaCCGAAGGCCAAGTCGAGGCGAGCGCCTCGGCGAACCGTGGCCGAGCGACAAGATCAGCGCAAGTACACGCCCTCGGCGCCTCGGCGACGCCGCCACGAGTGTCGCTTCTGCTCGAAGCTGTACGCCACGCAGTCCCAGCTGGCCCTGCACGTGCGCAGCCACACCAATCAGAGCTTCGTGTGCAACTTTTGCGGCGAGCCCCAGCTGTCCGCGGACACCCTCAACGTCCACCTCGGCCGCTATCACCGCGAGGCCAGCGTCAGCTGTCAGATCTGCAAGCGCTTCTTCGCCAGCCAACGCAGTCTCACGCTGCACTCGCGCTGCCACACCAACGAGGACAAGCGCAAGCACGTCTGTCTGGTCTGCGACAAGAGCTTCAGCAGCCACGCCTATCTGAAGACCCACGCGAAGCAGCACGCCCTCGCGCCCAAAGTGCTGGCGCCCAAGAAGACCTACAACTGCGCCGACTGCGACTTCTCCACGGTGTACAGCAGCAATCTGCAGAAGCACGTGGCCACCCACACGGGCGAGAACAAGTCCATGTGCCACGTGTGCGGCAAGTGGGTGGTGCGCTCCTACATGCCCGTCCACGTGCGCATCCACTCGAGCGAGAAGCCCCACCTCTGCGACATCTGCGGCAAGCGCTTCAGCGTGCTCAAGTATCTGCTGGCGCACGAGCGCATGCACACCGGCGACAAGCCCTACCGCTGCCAGATCTGCAACAAGCGCTTCTCCCAGGAGACACCCCTCAAGATGCACATCAAGCTGCATCAGCGCAAGTTAAGAATTAACAATGACGAgagcgacgatgacgacgccGACGCCGACGATTTCGATGATGATGACTGTTAA
- Protein Sequence
- MIINIHGQKVEEKKLIPRNRVNKSLDKSGGQSIVRRTVKTDVKKSKPAKNDSTPRFVENVPEMIKNYVNGPPYECDSCDDTYEDQKNLTIHKMERSIVRAREQFKTRNSHVCSVCGSAFKTSSELVAHYEYCRSGHQTRAQQLWSVVCEICNRKFKDLKSQKAHKAWSHSINILCPLCDKQLSSTKELLAHQTSVHAKESRHSCRYCGKSFDELLSLQAHVSRHEGKNGPVSCSYCDKIFRHEHYLKRHVESVHQDPGRMVVLKTSNLRKKNKEIKMYKCEICEYETKRRSFFLMHANKHNTPERKECELCGKKLRPKYFNIHMRIHMDDFKCDKCGKIVNGKSKIVQHMAMHGVDQKDVLSAVGSEKLSIRSRTDVAEPPRKIQRVVKDENSLIIPEEHNYSHRVGSESLSVSGEIQCATIGGQVTPKAKSRRAPRRTVAERQDQRKYTPSAPRRRRHECRFCSKLYATQSQLALHVRSHTNQSFVCNFCGEPQLSADTLNVHLGRYHREASVSCQICKRFFASQRSLTLHSRCHTNEDKRKHVCLVCDKSFSSHAYLKTHAKQHALAPKVLAPKKTYNCADCDFSTVYSSNLQKHVATHTGENKSMCHVCGKWVVRSYMPVHVRIHSSEKPHLCDICGKRFSVLKYLLAHERMHTGDKPYRCQICNKRFSQETPLKMHIKLHQRKLRINNDESDDDDADADDFDDDDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482938;
- 90% Identity
- iTF_01482938;
- 80% Identity
- -