Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000018.1:1888488-1891238[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.083 3 9.2 0.1 1 20 11 30 11 32 0.94

2 16 0.00078 0.028 15.6 0.1 1 20 48 67 48 69 0.94

3 16 0.0085 0.31 12.3 0.3 2 23 85 107 84 107 0.90

4 16 0.0068 0.25 12.6 0.1 3 23 113 134 112 134 0.96

5 16 0.0018 0.067 14.4 0.5 1 23 140 162 140 162 0.96

6 16 0.00011 0.0039 18.3 2.9 2 23 170 192 169 192 0.94

7 16 0.074 2.7 9.4 4.1 1 23 216 238 216 238 0.98

8 16 0.0036 0.13 13.5 0.7 2 23 245 265 244 265 0.97

9 16 0.00026 0.0095 17.1 0.3 1 23 269 291 269 291 0.98

10 16 0.0032 0.12 13.7 1.7 1 23 397 419 397 419 0.97

11 16 8.4 3.1e+02 2.9 0.2 1 23 424 447 424 447 0.76

12 16 0.043 1.6 10.1 3.1 2 21 453 472 452 474 0.92

13 16 0.00033 0.012 16.8 3.5 1 23 482 504 482 504 0.96

14 16 0.00011 0.0039 18.3 0.3 1 23 517 539 517 539 0.98

15 16 0.00011 0.004 18.3 0.9 3 23 574 594 572 594 0.96

16 16 2.6e-05 0.00095 20.3 1.2 1 23 600 622 600 622 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.083	3	9.2	0.1	1	20	11	30	11	32	0.94
2	16	0.00078	0.028	15.6	0.1	1	20	48	67	48	69	0.94
3	16	0.0085	0.31	12.3	0.3	2	23	85	107	84	107	0.90
4	16	0.0068	0.25	12.6	0.1	3	23	113	134	112	134	0.96
5	16	0.0018	0.067	14.4	0.5	1	23	140	162	140	162	0.96
6	16	0.00011	0.0039	18.3	2.9	2	23	170	192	169	192	0.94
7	16	0.074	2.7	9.4	4.1	1	23	216	238	216	238	0.98
8	16	0.0036	0.13	13.5	0.7	2	23	245	265	244	265	0.97
9	16	0.00026	0.0095	17.1	0.3	1	23	269	291	269	291	0.98
10	16	0.0032	0.12	13.7	1.7	1	23	397	419	397	419	0.97
11	16	8.4	3.1e+02	2.9	0.2	1	23	424	447	424	447	0.76
12	16	0.043	1.6	10.1	3.1	2	21	453	472	452	474	0.92
13	16	0.00033	0.012	16.8	3.5	1	23	482	504	482	504	0.96
14	16	0.00011	0.0039	18.3	0.3	1	23	517	539	517	539	0.98
15	16	0.00011	0.004	18.3	0.9	3	23	574	594	572	594	0.96
16	16	2.6e-05	0.00095	20.3	1.2	1	23	600	622	600	622	0.98

Sequence Information

Coding Sequence: atgataaaaaattacgataacGGCCCCCCATACGAGTGCGATTCGTGCGACGACACGTACGAAGACAGAAAGAACTTGACCATTCACAAGATGGAGAGATCgatcgtgcgcgcgagagagcaatTCAAAACGAGAAACTCGCACGTCTGCAGCGTCTGCGGCTCCGCGTTCAAGACGAGCTCGGAGCTGGTCGCGCATTACGAGTACTGCCGATCGTGCCACCAGACAAAAGCTCAGCAACTGTGGTCGGTCGTCTGCGAGATATGCGATCGCAAGTTCAAAGACTTGAAGTCCCAAAAGGCGCACAAGGCCTGGTCGCACTCGGTCGACATCCTCTGCCCGCTGTGCGACGAGCGATTGAGCTCGCCCAAGGAGCTGTTGGCGCATCAAACGAGCGTACACGCGAAAGAGTCGAGGCACTCGTGTAGATATTGCGGCAAGAGCTTCGACGAGTATCTGGCCCTCGAAGCTCACGTGGCCCGTCACGAGGGTGAAAATGGCCCGGTGTCCTGCTCGTATTGCGATAAGATTTTCAGGCACGAGCATTACCTCAAGAGGCACGTGGAATCCATACACCAAGATCCAGGAGGGACGGTTGTCCTCGAAACGAGTAATCCAAGAGAAAAGagcaaagaaattaaaatgtacaagTGCGAGCATTGCGAGTACGAGACGAAAACGAGGAGCTTTTTCCTCCTGCACGCTAACAAGCATAATACACCTGAAAGAAAAGAGTGCGAACTTTGTGGGAAAAAATTGCGAcccaaatattttaatatacatatgaGAATTCACATGGACGATTACAAGTGCGATAAATGCGGAAAAATCGTTAACGGAAAGAGGAAACTTGTCCAGCATATGGCTATGCACGGCGTTGATCAGACAGTCGTGCTAAGCGCAGTCGGTTCAGAAATACTCTCGATACGTAGTCGGGCTGATGTTGCCGAACCACCTCGAAAGATCCAAAGGGTTGTAAAAGACGAAAACTCCTTGATAATTCCCGAGGAGCATAATTACTATCATCGGCCTGGTTCTGAAAATCTCTCGGTTTCTGGAGAGATTCAATGCGCTACCATAGGTGGTCAAGTGacaCCGAAGGCCAAGTCGAGGCGAGCGCCTCGGCGAACCGTGGCCGAGCGACAAGATCAGCGCAAGTACACGCCCTCGGCGCCTCGGCGACGCCGCCACGAGTGTCGCTTCTGCTCGAAGCTGTACGCCACGCAGTCCCAGCTGGCCCTGCACGTGCGCAGCCACACCGATCAGAGCTTCGTGTGCAACTTTTGCGGCGAGCCCCAGCTGTCCGCGGACACCCTCAATACCCACCTCGGCCGCTATCACCGGGAGGCCAGCGTCAGCTGTCAGATCTGCAAGCGCTTCTTCGCCAGCCAGCGCAGTCTCACCCTGCACTCGCGCTGCCACGCCAACGAGGACAAGCGCAAGCACGTCTGTCTGGTCTGCGACAAGAGCTTCAGCAGCCACGCCTATCTGAAGACCCACGCGAAGCAGCACGCCCTCGCGCCCAAAGCGCTGGCGCCCAAGAAGACCTACAACTGCGCCGACTGCGACTTCTCCACGGTGTACAGCAGCAATCTGCAGAAGCACGTGGCCACCCACACGGGCGAGAACAAGTCCATGTGCCACGTGTGCGGCAAGTGGGTGGTGCGCTCCTACATGCCCGTCCACGTGCGCATCCACTCGAGCGAGAAGCCCCACCTCTGCGACATCTGCGGCAAGCGCTTCAGCGTGCTCAAGTACCTGCTGGCGCACGAGCGCATGCACACCGGCGACAAGCCCTACCGCTGCCAGATCTGCAACAAGCGCTTCTCCCAGGAGACTCCCCTCAAGATGCACATCAAACTGCATCAGCAAAAATTGAGAATTAATAATGAGGAgagcgacgatgacgacgccGACGATTTCGATGGCGATGACTCTTAA
Protein Sequence: MIKNYDNGPPYECDSCDDTYEDRKNLTIHKMERSIVRAREQFKTRNSHVCSVCGSAFKTSSELVAHYEYCRSCHQTKAQQLWSVVCEICDRKFKDLKSQKAHKAWSHSVDILCPLCDERLSSPKELLAHQTSVHAKESRHSCRYCGKSFDEYLALEAHVARHEGENGPVSCSYCDKIFRHEHYLKRHVESIHQDPGGTVVLETSNPREKSKEIKMYKCEHCEYETKTRSFFLLHANKHNTPERKECELCGKKLRPKYFNIHMRIHMDDYKCDKCGKIVNGKRKLVQHMAMHGVDQTVVLSAVGSEILSIRSRADVAEPPRKIQRVVKDENSLIIPEEHNYYHRPGSENLSVSGEIQCATIGGQVTPKAKSRRAPRRTVAERQDQRKYTPSAPRRRRHECRFCSKLYATQSQLALHVRSHTDQSFVCNFCGEPQLSADTLNTHLGRYHREASVSCQICKRFFASQRSLTLHSRCHANEDKRKHVCLVCDKSFSSHAYLKTHAKQHALAPKALAPKKTYNCADCDFSTVYSSNLQKHVATHTGENKSMCHVCGKWVVRSYMPVHVRIHSSEKPHLCDICGKRFSVLKYLLAHERMHTGDKPYRCQICNKRFSQETPLKMHIKLHQQKLRINNEESDDDDADDFDGDDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01484094;
90% Identity: iTF_01484094;
80% Identity: -