Teva015226.1
Basic Information
- Insect
- Trichogramma evanescens
- Gene Symbol
- -
- Assembly
- GCA_902732785.1
- Location
- CACVKI010138128.1:70845-72176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.8e-06 0.00024 21.5 0.7 1 23 23 46 23 46 0.97 2 14 0.0001 0.0088 16.6 3.7 1 23 56 78 56 79 0.96 3 14 1.8e-06 0.00015 22.1 0.2 2 23 86 108 85 108 0.95 4 14 2e-05 0.0017 18.8 4.0 1 23 118 141 118 141 0.97 5 14 2.5e-06 0.00021 21.7 0.2 1 23 147 170 147 170 0.96 6 14 0.0036 0.3 11.7 1.1 1 23 176 199 176 199 0.96 7 14 2.4e-06 0.0002 21.7 0.4 1 23 204 227 204 227 0.98 8 14 0.0001 0.0085 16.6 2.7 2 23 234 256 233 256 0.94 9 14 0.34 29 5.5 2.2 3 23 266 287 264 287 0.92 10 14 0.00042 0.035 14.7 1.1 3 23 296 317 294 317 0.96 11 14 1.6e-05 0.0014 19.1 0.4 1 23 331 353 331 353 0.98 12 14 0.00021 0.018 15.6 3.4 2 23 360 382 359 382 0.96 13 14 1.1e-05 0.00097 19.6 0.4 1 23 387 410 387 410 0.97 14 14 0.00021 0.018 15.6 1.6 2 23 417 439 416 439 0.95
Sequence Information
- Coding Sequence
- ATGGCTGCGATGAACGATCCGCCGcatccaccaccaccagcaccgGGCGAGGGGCCCGCGAAGCGGTACTTCTGCGACGAGTGCGGCTCGGGCTTCACGCGGCGCGCCAGCCTGACGAGGCACACGAGGTCGGTGCACAACACCGATCGGGAGGAGGGCGAGGGCTACGAGTGCCGCTACTGCTATCGAGTGTTCAGCAGGCGCGACCTCAGGCTGAGGCACATACGCGAGCATCACGCGCACGCCCGGACCAAGTCGTGCCCCTACTGCGGCAAGACGTTCGCGCAGGCGAGCTCGATGCGCTACCACGTGCGCGCCGAGCATCTCGGGGGCCGGGGCGCCGCCCGTCGCCACCAGTGCGACGAGTGCCAGCGCAGCTTCGTCACGGAGCACCATCTGCGCGAGCACGCGAGGGTGGAGCACGCGCGGCCCAGGGCTCACCCGTGCCCGGACTGCGACAAGAGCTATCCGACCGAGGCCCGACTGAACAGGCACGTGAGGTCGGCCCACGACGTGCCGCGCAATCACGAGTGCGCGAGGTGCGAGGCCCGCTTCGTCTACAGGCACGAGCTCGCGAGGCACGAGAAGGTGGCCCACGAGGGCTTCCGCTATCCGTGCGGCGTCTGCGACAAGGCCTACACGACGAGATTCGACCTCAAGGACCACTACAAGACGGCGCACATGGGCAGAAGGGATTGGAAGTGCGACCACTGCGGCAAGCAGTTCGGCCGCAAGAAGTTCATGCGCAAGCACATAATCCAGCTGCACGGCGAGGGCGCGAGCACCGAGTGGCCGTGCAAGTGCTGCGAGACGGTGTGCGCGAGCCGCGAGGAGCTGGAGCTGCATCACCGGGCCGCCCACATGGCCCTAACGAACGAGTGGGCCTGCAAGCAGTGCGACCAGAAGTTCAACGAGAAGAGGTTCCTGATCCGTCACGTCAAGCGCTTGCACAAGGAGCGCGCGTCGACGTCCGtggccgccaccgccgcgttCCCCTGCGACCTCTGCGAGAAGCAGTTCGCCAAAAAATTCGACCTGATCGATCACCTGAGGTCGCACAAGAGGGGCGCCGAGTGGTGCTGTCCCCGTTGCGACATGCGCTTCGCCAAGAAGACGAGCCTGGTCAAGCACAAGCGCACGACCCACGAGGGCGTGACCTATCCCTGCGAGATCTGCGGCAGGCAGTACAGGGCCAAGTACGAGCTGGCGCATCACATCAAGTCGATCCACCTGAACAAGGCCGACTGGAGGTGCGAGTTCTGCGACAAGGACTTCAAGATGAAGAAGTACTTGGTGAATCACAAGAGGAACGTCCACAAGGTCAACGATTGA
- Protein Sequence
- MAAMNDPPHPPPPAPGEGPAKRYFCDECGSGFTRRASLTRHTRSVHNTDREEGEGYECRYCYRVFSRRDLRLRHIREHHAHARTKSCPYCGKTFAQASSMRYHVRAEHLGGRGAARRHQCDECQRSFVTEHHLREHARVEHARPRAHPCPDCDKSYPTEARLNRHVRSAHDVPRNHECARCEARFVYRHELARHEKVAHEGFRYPCGVCDKAYTTRFDLKDHYKTAHMGRRDWKCDHCGKQFGRKKFMRKHIIQLHGEGASTEWPCKCCETVCASREELELHHRAAHMALTNEWACKQCDQKFNEKRFLIRHVKRLHKERASTSVAATAAFPCDLCEKQFAKKFDLIDHLRSHKRGAEWCCPRCDMRFAKKTSLVKHKRTTHEGVTYPCEICGRQYRAKYELAHHIKSIHLNKADWRCEFCDKDFKMKKYLVNHKRNVHKVND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482911;
- 90% Identity
- -
- 80% Identity
- -