Tden003167.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000005.1:2457084-2458409[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00013 0.0046 18.1 0.3 1 23 16 39 16 39 0.96 2 14 0.00011 0.0039 18.3 3.4 1 23 49 71 49 72 0.96 3 14 4.7e-05 0.0017 19.4 0.5 2 23 79 101 78 101 0.94 4 14 0.00016 0.006 17.7 4.7 1 23 112 135 112 135 0.97 5 14 0.00016 0.0058 17.8 0.2 1 23 141 164 141 164 0.96 6 14 0.0083 0.31 12.4 2.2 1 23 170 193 170 193 0.95 7 14 0.0026 0.096 14.0 0.2 1 23 198 221 198 221 0.97 8 14 6.3e-05 0.0023 19.0 1.8 2 23 228 250 227 250 0.94 9 14 1.3 47 5.5 2.2 3 23 259 280 257 280 0.92 10 14 0.0011 0.041 15.1 1.0 3 23 289 310 287 310 0.96 11 14 0.00012 0.0045 18.1 0.6 1 23 328 351 328 351 0.96 12 14 0.00041 0.015 16.5 2.5 2 23 358 380 357 380 0.96 13 14 4.3e-05 0.0016 19.6 0.4 1 23 385 408 385 408 0.97 14 14 6.7e-05 0.0024 19.0 1.1 2 23 415 437 414 437 0.96
Sequence Information
- Coding Sequence
- ATGGACGATCCGCCGCATCCATCGGGCGAGCGGCACCCGAAGCGGTACTTCTGCGACGGGTGCGGCTCGGGCTTCACGCAGCGCGCCAGCCTGATCAGGCACAACAGGTCGGTGCACAATCCCGATCGGGAGGAGGGCGAGGGCTACGAGTGCCGCTACTGCCAGCGAGTGTTCAGCAGGCGCGACCTCAGGCTGAGGCACATACGCGAGCATCACGCGCACGCCCGGACCAAGTCGTGCCGCTACTGCGGCAAGACGTTCGCGCAGGCGAGCTCGATGCGCTACCACGTGCGCGCCGAGCACCTCGGGGCCAGGGCCGGCGGCGCCGCCCGACACCGCTGCGACGAGTGCCAGCGCAGCTTCGTCACGGAGCACCATCTGCGCGAGCACGAGAGGGTGGAGCACGCGCGGCCCAGGGCCCACCCGTGCCCGGACTGCGCCAAGAGCTATCCGACCGAGGCCCGGCTCAACAGGCACGTGAGGTCGGCCCACGACGTGCCGCGCAATCACAATTGCGCGAGGTGCGAGGCCAGCTTCGTCTACAGGCACGAGCTCAAGAGGCACGAGAAGGTGGCCCACGAGGGCTTCCGCTATCCCTGCGGCGCCTGCGACAAGGTCTACATGACGAGATTCGACCTGATGGACCACTACAAGTCGGCGCACATGGGCAGAAAGGAGTGGAAGTGCGACCACTGCGGCAAGCAGTTCGGCCGCAAGAAGATGATGCGCAGGCACATAATCCAGGTGCATCTCGGCGCGAGCACCGAGTGGCCGTGCAAGTGCTGCGAGACGGTGTGCGCGAGCCGCGAGGAGCTGGAGCTGCATCACCGGGCGGCCCACATGGCCCGACCGAACGAGTGGGCCTGCAAGCAGTGCGACCAGAAATTCAACGAGAAGAGGTTCCTGATCAATCACATCAAGCGTTTGCACAAGGAGCGCGCGTCGACGTCCGtggccgccgtcgccgccgccgtcgccgcgtTCCCCTGCGACCTCTGCGACAAGCAGTTCACCAAGAAATTCGACCTGGCCGATCACCTGACGCGGGAGCACACGAGGGGCGACGAGTGGTGCTGTCCCCGTTGCGACATGCGCTTCGCCAAGAAGACGAGCCTGGTCAAGCACAAGCGCACGGCCCACGAGGGCGTCACCTATCCCTGCGAGATCTGCGGCAGGCAGTACAGGGCCAAGTACGAGCTGGCGCATCACATCAAGTCGATCCACCTGAACAAGGCCGACTGGAGGTGCGAGATCTGCGACAAGGACTTCAAGATGAAGAGGTACTTGATCAAACACAAGAGGAACGTCCATAAGATCAACGATTGA
- Protein Sequence
- MDDPPHPSGERHPKRYFCDGCGSGFTQRASLIRHNRSVHNPDREEGEGYECRYCQRVFSRRDLRLRHIREHHAHARTKSCRYCGKTFAQASSMRYHVRAEHLGARAGGAARHRCDECQRSFVTEHHLREHERVEHARPRAHPCPDCAKSYPTEARLNRHVRSAHDVPRNHNCARCEASFVYRHELKRHEKVAHEGFRYPCGACDKVYMTRFDLMDHYKSAHMGRKEWKCDHCGKQFGRKKMMRRHIIQVHLGASTEWPCKCCETVCASREELELHHRAAHMARPNEWACKQCDQKFNEKRFLINHIKRLHKERASTSVAAVAAAVAAFPCDLCDKQFTKKFDLADHLTREHTRGDEWCCPRCDMRFAKKTSLVKHKRTAHEGVTYPCEICGRQYRAKYELAHHIKSIHLNKADWRCEICDKDFKMKRYLIKHKRNVHKIND
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485287; iTF_01484089;
- 90% Identity
- -
- 80% Identity
- -