Tden006846.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000017.1:1749888-1750890[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0061 14 6.7 0.0 26 50 144 168 130 172 0.81 2 4 0.048 1.1e+02 3.8 0.0 23 48 170 195 168 200 0.85 3 4 0.00087 1.9 9.4 0.1 22 48 198 224 195 230 0.84 4 4 0.0062 14 6.7 0.1 23 48 228 253 222 259 0.88
Sequence Information
- Coding Sequence
- ATGGAAAACAACAGTGCCGTTATTagGGTAAAGAATGAACCGAGAGATACTTGGCCGAATGATGGTgatgattttgtttttgatcCAGTTGACTCTTGCAAAGTTGAAAACTATGAAACATTaccattttataaatcatcagccAATGACATGAATGAGGATATGGTACTGCAGGAAAAAACAGATGATAAAATACCTATTGTTTTTGAGTGCAAAGATTTTAAATCTGAACCGGAGTCTTTATCAACAACAATCTGCACAATTGAGGATCGGATTTGTCAATCTattgtgaaaatagaaaacaaaGATCAGACCAATTATTTTCTTGATTCTATAGTTTTGATACAACAAAAATGTAATCTTGctaataattttcaactcaACACGAATACTCGGATAAACTCAGAACACGATGGTAAGAAATATGTCGAATGTGACAGATGTCTCAAATCCTTTGGTGACAAGAGAGACCTCAAACGTCACGTCAGTGTAGTACATTTTCGGAgcaaacctttcgaatgtgacaAATGTCTCAAATCCTTTGGTGACAAGAGAGACCTCAAACGTCACGtcaatacagtacataatcggaataaaccctttgaatgtgatatttgtcacaaatcatttggataccaaAAGAATCTCAAAAGACACATAAGTGCAGTTCATGATCtgagcaaaccctttgaatgtgacatttgtcgtaaatcatttggaaaaaaagaaaatctcaaTCGTCACATCAATACCGTACATAATCGAAGCAAACCCTTCAAGTGTGACTTTTGTCACAAttcatttggagaaaaaaacgcTCAAAAAACACGTGAATGCAGTACATGTTCGTATTAA
- Protein Sequence
- MENNSAVIRVKNEPRDTWPNDGDDFVFDPVDSCKVENYETLPFYKSSANDMNEDMVLQEKTDDKIPIVFECKDFKSEPESLSTTICTIEDRICQSIVKIENKDQTNYFLDSIVLIQQKCNLANNFQLNTNTRINSEHDGKKYVECDRCLKSFGDKRDLKRHVSVVHFRSKPFECDKCLKSFGDKRDLKRHVNTVHNRNKPFECDICHKSFGYQKNLKRHISAVHDLSKPFECDICRKSFGKKENLNRHINTVHNRSKPFKCDFCHNSFGEKNAQKTRECSTCSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483285;
- 90% Identity
- iTF_01483285;
- 80% Identity
- iTF_01483285;