Tden019967.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000103.1:377269-379024[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.1 2.4e+03 -0.5 0.0 28 48 174 194 170 197 0.82 2 9 0.31 6.9e+02 1.2 0.1 24 48 198 222 187 225 0.82 3 9 4 8.9e+03 -2.3 0.0 26 44 228 246 227 248 0.86 4 9 5.8 1.3e+04 -2.8 0.0 37 48 267 278 257 280 0.78 5 9 0.96 2.1e+03 -0.3 0.0 27 48 313 334 308 337 0.88 6 9 0.014 30 5.6 0.0 24 48 366 390 359 393 0.89 7 9 0.0032 7.2 7.6 0.0 26 48 396 418 391 421 0.93 8 9 0.097 2.2e+02 2.9 0.0 27 48 453 474 450 480 0.92 9 9 0.098 2.2e+02 2.8 0.0 26 48 480 502 476 505 0.91
Sequence Information
- Coding Sequence
- ATGGAATCGAGCGGAATGTTTAACTGTGTCGTCAgaGTGAAAAGTGAACCTATTGATTTGTCATTTGCTGAGAATGAGTATAATAGTATTGACGAGACActcgatgataaaaattttgtattttccaGATGTCCGCAAGAATACCCAATTCGCGTGCTTCGAAAATCTGACGAAAGTCACGAAGGTGAACTTGACGAGTTGACGATAGAATTGGAATGTAAAGAACAGAAGCCCAAAATTGATTTACTAGCGGTTACgaagattgaaaattcgtTCCAAAATCACTCGCAGCATATGGAAGATAGAAATGGTTATCAAGTTCGAGgtgaaattaaaatagaaaatttggGAGCAATGAAAAAGGAATCATTCGCGGACGACGCAAGCCAATTGAATGTTGAATTCGACTGTGGACTCAGCGAGACAAATGAAACTAGCTGTGCTAGAAACAAGTTGAACAATAAATGTAGCCTCAAAACGCGCATCGGAACGGCACACAATGGTGTCACCAACACTCgtgatatttgtaaaaagaCTTGCGGATCTAAGAGTAATCTCCAAAAACACATTGATATGGTACATAATGAGATCTCTCATGCATGTAGTATTTGCGGAAACACATTCATACGAAAGATTAATCTAAAAATACACATTGACACGGAGCATAATGGAGTTAGatatgcatgtgatatttgcggaaagaaatacTCTCAGAAAATTCATctgaaaaaacacatcgattctGCGCCTCATAAAATCGAACATGAATGTGATCgttgtggaaaaaaattttcgacgaAGAGTAATCTCAACAAACACATCGATGTGGCGCACAATGGTATCGCCCCTATCTGTGAGACATGTGGTAAGATATTTGCACGACTGGATGTTCTCAAACGCCATATCAATTCGGTACATGataaaatcactcatgaatgtgatatttgcggaaagaaattctcaGGCAAGTGGAATCTCAAGAATCACATCGATGTGGCGCACAATGGTATCGCCCCTATCTGTGAGACATGTGGTAAGACATTTGCACGACTGGATGTTCTCCAACGCCATATCAATTCGATACATGACAAAATCCCtcatgaatgtgatatttgcggcaAAAAATTCTCAGacaagagtaatctcaaaagACACATTGATGCAacgcacaatggtgtcacacatACTTGTGAtatatgcaaaaagaaattctcCACTAGCAATAATCTAAAAAATCACATCGATGTGGCGCACAATGGTATCGTCCCTATCTGTGAGACATGTGGTAAGACATTTGCACGACTGGATGTTCTCAAACGCCATATCGATTCGGTACATAACAAAATCATtcatgaatgtgatatttgcggcaAATCATTTACTCAACAAGTTAATCTCAAAATACACATCGATGTAGTGCACAATGGTGTTAggcatgcatgtgatatttgcggaaaaaaattctcagataagagtaatctcaagaaacacatcgatgtggcgcacaatggtgtcacccATACTTGTGATCTTTGTGGaaaagacattttcaaaaaagaaatctcAAGAACACATCGATGTGGCGCACAATGGTATTAG
- Protein Sequence
- MESSGMFNCVVRVKSEPIDLSFAENEYNSIDETLDDKNFVFSRCPQEYPIRVLRKSDESHEGELDELTIELECKEQKPKIDLLAVTKIENSFQNHSQHMEDRNGYQVRGEIKIENLGAMKKESFADDASQLNVEFDCGLSETNETSCARNKLNNKCSLKTRIGTAHNGVTNTRDICKKTCGSKSNLQKHIDMVHNEISHACSICGNTFIRKINLKIHIDTEHNGVRYACDICGKKYSQKIHLKKHIDSAPHKIEHECDRCGKKFSTKSNLNKHIDVAHNGIAPICETCGKIFARLDVLKRHINSVHDKITHECDICGKKFSGKWNLKNHIDVAHNGIAPICETCGKTFARLDVLQRHINSIHDKIPHECDICGKKFSDKSNLKRHIDATHNGVTHTCDICKKKFSTSNNLKNHIDVAHNGIVPICETCGKTFARLDVLKRHIDSVHNKIIHECDICGKSFTQQVNLKIHIDVVHNGVRHACDICGKKFSDKSNLKKHIDVAHNGVTHTCDLCGKDIFKKEISRTHRCGAQWY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482820;
- 90% Identity
- iTF_01482820;
- 80% Identity
- iTF_01482820;