Tden026113.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000198.1:60222-61514[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.18 4e+02 2.0 0.0 24 52 128 156 115 158 0.88 2 8 0.23 5.2e+02 1.6 0.1 22 48 154 180 149 187 0.83 3 8 1.7 3.8e+03 -1.1 0.0 23 45 184 206 174 214 0.73 4 8 0.021 46 5.0 0.0 22 48 212 238 198 243 0.86 5 8 0.0036 8 7.4 0.0 23 48 242 267 235 272 0.87 6 8 0.053 1.2e+02 3.7 0.0 23 48 271 296 266 301 0.86 7 8 0.00021 0.46 11.4 0.0 23 50 300 327 296 331 0.88 8 8 0.16 3.6e+02 2.2 0.0 21 48 327 354 326 360 0.86
Sequence Information
- Coding Sequence
- ATGGAAAGCAGAAAGGATTTAGTTAGTGTTAAAGAGGAGCCTCATGACAGTTGGGAAGATGTAGCCGACGTGAGTATCGATCCGGGGTTCTTGGTGAAAACTGAAAACTCTGATGAATCATCGgCAAATCCCACCAATGACTGTATTTCGTCGCAGCAGAAGACAGATGAGGATATTTTTATAGATTGCGAGAGCGTATTGGTAAAACCGGAACATAAGCCCTCATTGACTGTAAAGGAAGAAAATCCAACAAATGACTTGAATGGGAAAAGGcttacaattttaattgaaaaaggaTTCAATTACGATAGTAATCGTCAATTTACCAAAGAAGAAGCGACTTCAACGAGACAAATGAAAACGACCCACAAGGGCATGGGACCACTTGAATGTGATagttgtcataaatcatttagTAACCCGAGTAATCTTAAAAACCACGTTAAGCAAGTACATAAGAACAAACCCTTACcgtgtgaaatttgtcacgaATCATTTTTCCTCCAAAGATATCTGCGTACTTACAtgaatacagtacataatcagagcaaacccttcaaatgtgtgatttgtgacaaatcatttggatacaagagTGACCTTAATAAACACAccaatgcagtacataatcaaagcaaacccttcgagtgcgatatttgtcacaaatcatttggaaaaaaaggtGACCTTAAAAGACATATAAGTGCAGTTCatgatcggagcaaacccttcgaatgtaaaatttgtcacaattcatttggacaaaaaggtgACCTTAAAAGACATATAAGTGCAGTTCATGATCGGAGTAAACCCTttgagtgtgatatttgtcacaaatcatttggacataAAGGTGACCTTAAAAGACATATAAGTGCAGTTCATGATCGGAGTAAACCCTttgagtgtgatatttgtcacaaatcatttggacaaaaaggtaATCTCGAAAGGCATATCCATGTAGTACATATGAGTAGCAAACCTttcgagtgtgatatttgtcaaaactcatttggacaaaaaattcaCCTCACAGCTCACATAAAGGCAGTACATCTTAGAAGCagaccctttgaatgtgagactTGTCACAAGTCATTTAGCGGCAAGAATTATCTCGAAAATCACATTAATGCAGTACATATGGAAAGCAAATCTTag
- Protein Sequence
- MESRKDLVSVKEEPHDSWEDVADVSIDPGFLVKTENSDESSANPTNDCISSQQKTDEDIFIDCESVLVKPEHKPSLTVKEENPTNDLNGKRLTILIEKGFNYDSNRQFTKEEATSTRQMKTTHKGMGPLECDSCHKSFSNPSNLKNHVKQVHKNKPLPCEICHESFFLQRYLRTYMNTVHNQSKPFKCVICDKSFGYKSDLNKHTNAVHNQSKPFECDICHKSFGKKGDLKRHISAVHDRSKPFECKICHNSFGQKGDLKRHISAVHDRSKPFECDICHKSFGHKGDLKRHISAVHDRSKPFECDICHKSFGQKGNLERHIHVVHMSSKPFECDICQNSFGQKIHLTAHIKAVHLRSRPFECETCHKSFSGKNYLENHINAVHMESKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482970;
- 90% Identity
- iTF_01482970;
- 80% Identity
- iTF_01482970;