Tden001296.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000002.1:5580891-5582224[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00057 1.3 10.0 0.1 23 48 186 211 173 216 0.87 2 6 0.0067 15 6.6 0.0 23 48 215 240 212 245 0.88 3 6 0.0023 5.2 8.0 0.0 23 44 244 265 240 270 0.90 4 6 0.31 6.9e+02 1.2 0.0 23 47 305 329 298 336 0.82 5 6 0.0076 17 6.4 0.0 22 48 333 359 327 365 0.86 6 6 2.1 4.6e+03 -1.4 0.1 23 48 363 388 358 392 0.74
Sequence Information
- Coding Sequence
- ATGGAAACAAGTGGGGACATAGTTAGGGTGAAGCAAAAGCTGAGCGATACCGAGACCGATGCAGGCGACGATCATATTTTCGATTCAGTAGACTTTTGCGAAGCCAAAAACGTTGACACACGCCCGTTTAGTGAATTTTCGataaaaaatgcaCGCGAGGCCGTGGCGTTACAAAAGTCAGATAAAGAAATATCCAtagattttgagtgcaaagatgTAAAAATTGAACTGCCGTCACTATCAACTACCAACTGCAAAACTGAGTGTCAAAGTTATCCATCTATTGTAGaaatagaaaacaaaattcagaaaaattgcaCAGCtgacaaaattttgataattttaataaaaaaaggatttgatTACGATAGTAACTGTAAATCATTTCATAATGGTGATTTGAGTCCAAAAACTAATAAAGGAGAAATgagtagaaaaaaacatatcaaTACGAGACACAAGAGCATTAGACAATATGAATGTGATaattgtcacaaattatttggaaaaGAATTTAACCACAAACCCgatataaatgcagtacatgaacGTGgaaaacccttcgaatgtgacataTGCCATAAATTATTTAGACAAAAAAGTTATCTCAAATCTCACATTAATATAGTgcatgatcgtagcaaacctttcgaatgtggcatttgccacaaatcatttggacaaaaaagtgaCCTTAATCGTcatataaatgcagtacatgatcgcaTTAAACCattcgaatgtgatatttgtcacaaattatttggacaaaaaattaacCTTCAGCGTCACGTATATGGAGTACATGATCGGAGTAAactctttgaatgtgatagttgtcacaaatcatttggactaaaaAGTGACCTCAATCGCCTCAATCGTCACATAagtgcagtacataatcgaagcaaaccctttgaatgtgaaatttgccacaaatcatttggacgaaaatttaACCTCAACGTTCACGTAAACGGAGTACATAAACAGAGCAAACCTTtcgagtgtgagatttgtcacaaatcatttggacaaaagggTAATCttaaaattcacataaatgcaatacatgatcggagcaaaccttttgaatgtgagatttgtaacaaatcatttggatacaggCATTGTCTTAAAgatcacataaatgcagttcaTGGACGTAAAAAACCTTTTGAATAA
- Protein Sequence
- METSGDIVRVKQKLSDTETDAGDDHIFDSVDFCEAKNVDTRPFSEFSIKNAREAVALQKSDKEISIDFECKDVKIELPSLSTTNCKTECQSYPSIVEIENKIQKNCTADKILIILIKKGFDYDSNCKSFHNGDLSPKTNKGEMSRKKHINTRHKSIRQYECDNCHKLFGKEFNHKPDINAVHERGKPFECDICHKLFRQKSYLKSHINIVHDRSKPFECGICHKSFGQKSDLNRHINAVHDRIKPFECDICHKLFGQKINLQRHVYGVHDRSKLFECDSCHKSFGLKSDLNRLNRHISAVHNRSKPFECEICHKSFGRKFNLNVHVNGVHKQSKPFECEICHKSFGQKGNLKIHINAIHDRSKPFECEICNKSFGYRHCLKDHINAVHGRKKPFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483141;
- 90% Identity
- iTF_01483141;
- 80% Identity
- iTF_01483141;