Tden017289.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000080.1:127412-128677[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.008 18 6.3 0.0 26 48 166 188 152 194 0.85 2 7 0.12 2.6e+02 2.6 0.1 19 49 189 218 187 223 0.85 3 7 0.00074 1.7 9.6 0.1 23 48 221 246 218 249 0.89 4 7 0.075 1.7e+02 3.2 0.0 22 45 249 272 244 276 0.84 5 7 0.029 65 4.5 0.0 27 48 283 304 281 310 0.89 6 7 0.33 7.4e+02 1.1 0.0 23 48 308 333 304 339 0.85 7 7 0.031 70 4.4 0.1 23 49 337 363 333 367 0.86
Sequence Information
- Coding Sequence
- ATGGATAACTGTGGGAACGTAGTGAGgGTAAAAGAAGAGCCAAACGATACTTGGCCTGATGCACGTGACGATAATATTCTCGATTCGGTGGACTCTTGCGAAGTCAAAAACGTTGAGACATTCAAGTTTGATGAATCACTAgcaaATGGCATGAATGAGGTTATGGTGGCACCGGAACAGTTggataaaaaagtattcatagactttgagtgcaaaaatgttaaaactGAACTGAAGAGTCATCCACCAATCGTGAAAATGGAAAACCAAATTCAGCCCGAAAAATATCTAATaatcttgataaaaaaaggtttCGATTATCGTAATAATTGTCACTTTCAAGTAAATCCTCGATTTAAGATTAATGaatatgaatttgaaaaagattctCAAATCAAATTATCTTATGAGTgcaaaatgtatcaaaaaacacataaagAAACTACAAGGTTAAATACACAGACGAATTCGACACAGAAAGGCATTAGATCAtatgaatgtgaaatttgctACAAATTATTTGGACGAAAAGATAATCTTAAAGTGCAtgtaaatacagtacatagtCAGAGTAAACCTTTCGAATGTAAAacttgtcacaaatcatttggacgaaaagctgacctcaaaactcacataaatgtagtacattATCGGAGTAAACCCTttgagtgtgatatttgtcacaaatcatttggacaaaatagTAATCTTAATAGGCACATAAATTCAGTACACAATCGAAGccaacccttcgaatgtgatgTTTGTCATAAATTATTTGGACAAAGGCATGAACTTGACAACCACAAAATGATAGTACATGATGGTATAATactcttcgaatgtgagatttgccacaaatcatttggacaaaaaactAACCTCAAAACTCATGTTaatacagtacatgatcagagaaaacccttcgagtgtggtatttgtcacaaatcgtTTGGAGGCAAGGGAGTCCTCAAGAAACACATTAATATAGTACATAAACGTAtaaaacccttcgagtgtgatatttgtcacaaatcatttggattaaAAGGAAATCTCAAAAGACATACGAGAGCAGTGCATATCGGTAGGAAACCTTTCGAAAGTGAGATTcgttaa
- Protein Sequence
- MDNCGNVVRVKEEPNDTWPDARDDNILDSVDSCEVKNVETFKFDESLANGMNEVMVAPEQLDKKVFIDFECKNVKTELKSHPPIVKMENQIQPEKYLIILIKKGFDYRNNCHFQVNPRFKINEYEFEKDSQIKLSYECKMYQKTHKETTRLNTQTNSTQKGIRSYECEICYKLFGRKDNLKVHVNTVHSQSKPFECKTCHKSFGRKADLKTHINVVHYRSKPFECDICHKSFGQNSNLNRHINSVHNRSQPFECDVCHKLFGQRHELDNHKMIVHDGIILFECEICHKSFGQKTNLKTHVNTVHDQRKPFECGICHKSFGGKGVLKKHINIVHKRIKPFECDICHKSFGLKGNLKRHTRAVHIGRKPFESEIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483048;
- 90% Identity
- iTF_01483048;
- 80% Identity
- iTF_01483048;