Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000006.1:1991004-1993267[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.02 44 5.1 0.3 27 48 214 235 212 240 0.91

2 16 0.26 5.9e+02 1.5 0.1 26 46 242 263 233 269 0.78

3 16 0.029 65 4.5 0.0 21 48 266 293 262 298 0.88

4 16 0.0062 14 6.7 0.0 23 51 297 325 293 328 0.89

5 16 1.9 4.3e+03 -1.3 0.0 22 52 353 384 344 385 0.69

6 16 0.077 1.7e+02 3.2 0.0 23 47 383 407 377 410 0.88

7 16 0.00038 0.84 10.6 0.0 22 48 411 437 406 443 0.90

8 16 0.039 88 4.1 0.1 22 48 440 466 437 471 0.88

9 16 0.067 1.5e+02 3.4 0.1 24 52 471 500 463 501 0.78

10 16 0.25 5.6e+02 1.5 0.0 24 47 500 523 497 526 0.88

11 16 0.0029 6.5 7.7 0.1 22 49 527 554 523 559 0.86

12 16 2.2 4.9e+03 -1.5 0.0 23 45 557 579 555 584 0.77

13 16 3.3 7.4e+03 -2.0 0.1 18 43 584 606 576 615 0.67

14 16 0.041 92 4.0 0.0 22 48 614 640 609 645 0.88

15 16 0.014 31 5.6 0.1 23 49 644 670 640 675 0.85

16 16 1 2.3e+03 -0.4 0.0 23 48 673 698 670 699 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.02	44	5.1	0.3	27	48	214	235	212	240	0.91
2	16	0.26	5.9e+02	1.5	0.1	26	46	242	263	233	269	0.78
3	16	0.029	65	4.5	0.0	21	48	266	293	262	298	0.88
4	16	0.0062	14	6.7	0.0	23	51	297	325	293	328	0.89
5	16	1.9	4.3e+03	-1.3	0.0	22	52	353	384	344	385	0.69
6	16	0.077	1.7e+02	3.2	0.0	23	47	383	407	377	410	0.88
7	16	0.00038	0.84	10.6	0.0	22	48	411	437	406	443	0.90
8	16	0.039	88	4.1	0.1	22	48	440	466	437	471	0.88
9	16	0.067	1.5e+02	3.4	0.1	24	52	471	500	463	501	0.78
10	16	0.25	5.6e+02	1.5	0.0	24	47	500	523	497	526	0.88
11	16	0.0029	6.5	7.7	0.1	22	49	527	554	523	559	0.86
12	16	2.2	4.9e+03	-1.5	0.0	23	45	557	579	555	584	0.77
13	16	3.3	7.4e+03	-2.0	0.1	18	43	584	606	576	615	0.67
14	16	0.041	92	4.0	0.0	22	48	614	640	609	645	0.88
15	16	0.014	31	5.6	0.1	23	49	644	670	640	675	0.85
16	16	1	2.3e+03	-0.4	0.0	23	48	673	698	670	699	0.82

Sequence Information

Coding Sequence: ATGGAAATTAAAGATAACATAGTTTGgATTAAGGAAGAGCCGAACGATACCTGGGCAGATGCAGGCGTTGATTATAATTTCGATTCGGCTGGATCTTCCAAAATCGAAAACTGTGAAACATTTCCGTTTGATAAATCACCGgcaCATCACACAAATGAGGCGAGTgagtcaaatgaaaaattaaatgaaaaaatatttaaagattATAAGTGCAATGATGTTAAACTTGAACTACCGTCACTATCGACAACTAACTTCAATGGCGAGGGTCAAGATTTTGAAGCTATTGTAGAAGAAGAATATCAAACCGATgacaaaaaggaaaatatattCAGTGATTTTGAGGCCCATTATGTGAAACCTGAACTGCAGTATTTGTCAACAAACATCTGTGAAACGGAGTATCAAAGTTATCCACCAATTGAAAAACTAGAAAACCAAATTCAGATCAATTGCTTGAACAATAAAGATCCATTAATTTTAACGAATAATGAATTCGATTTTGCAAATGATGGTGACCTTTCAGAAAGTTCTCGTTTGGAACTTGACGCatccaaaaaattgaactttttgaatacaGAAGAAGAAAGCCTAAAAACACATATCAATACAGTACATAAGAGAATTCTATTATATGAATGTGCGATTTGTCACAATTCatatcgacaaaaaaaagccctaaaaattcacataaattcAGAACACAATAGTATCAAATTCTTCgaatgtaatatttgtcacaaattaaTTGGAAACCGAAGTCAACTCAAAAAGCACACTATAGAAATGCATAATAGtttcaaaccctttgaatgtgatatttgtcaaaaatcatttggagagaaaaataaacttacaAGGCACATGGAGACGGTACATGAAGGAagcaaaccttttgaatgtgatatttgtcataaaCCATTTGGACAAAGTAGTCACCTTAAATCTCATATAAGCATAGTACATAATGGTaaaaaaccttttgaatgtgaaatttgtcacaaatcatttgggtACAAGAGTAAACTCAAAAATCACAAGTCAGTACATGAACGCCGTCAATCTTTTGAATGTAAcgtttgtcaaaaatcatttggaaaaCAGAGTCAACTCAAAAAGCACACTAtagaaatacataaaaattgcaaaccctttcaatgtgaaatttgtcaaaagTCATTTGGACAGAAGACTAAACTTACAAGGCACATAACGACGGTACATGATGGTAGtcaacccttcgaatgtgaaatctgtcacaaattatttgggCAAAGTAGTCACCTTAAATCTCATATAAACGTAGTACATAATGGCAACAAACCTTttcaatgtgaaatttgtcacacaTCATTTGGACAACAAAGTAAACTCAAAAGTCACAtaaattcagtacataatAGTATCAAATCCTTGgaatgtaatatttgtcacaaattaaTTGGAAACCAAAGTCAACTCAAAAAACATACTATGGAAATACATAATCTATtaaaaccctttgaatgtgatatttgtcataaatcatttggagaaacAAATAAACTTACGAGGCATATGACGACGGTACATGATCGTAGccaacccttcgaatgtgaaatctgtcacaaatcatttggccAGAATAGTCACCTCAAATCTcacataaatgtagtacaCCATGGAAGCAAACcgtttgaatgtgaaatttgtcacaaatcatttgggtACCAGAGTAAACTCAAAAGTCACATAAATTCAGTACACGAACGCAGTCAATCTTTCGAATGTAACATTTGTCGAAAATCATTTGGAAACCAGAGTCAACTCAAAAGTCACATTTTTACAGTACATAATTgcagcaaaccctttgaatgtgatatttgtcaaaaatcatttggagagaaaaataaacttacaAGGCACATGGAGACGGTACACGAAGGAagcaaaccttttgaatgtgatatttgtcataaatcatttggacaaaatagTCACCTGAAATCTCACATAAACGTAGTACACCATGGAAGCAAAccatttgaatgtgaaatttgtcacaaatcatttggataccagaGTAAACTCAAAAATCACATAACGATAGTGCATAATCTTATCAATCTCCACGAGAGTGAGATTAGTTGA
Protein Sequence: MEIKDNIVWIKEEPNDTWADAGVDYNFDSAGSSKIENCETFPFDKSPAHHTNEASESNEKLNEKIFKDYKCNDVKLELPSLSTTNFNGEGQDFEAIVEEEYQTDDKKENIFSDFEAHYVKPELQYLSTNICETEYQSYPPIEKLENQIQINCLNNKDPLILTNNEFDFANDGDLSESSRLELDASKKLNFLNTEEESLKTHINTVHKRILLYECAICHNSYRQKKALKIHINSEHNSIKFFECNICHKLIGNRSQLKKHTIEMHNSFKPFECDICQKSFGEKNKLTRHMETVHEGSKPFECDICHKPFGQSSHLKSHISIVHNGKKPFECEICHKSFGYKSKLKNHKSVHERRQSFECNVCQKSFGKQSQLKKHTIEIHKNCKPFQCEICQKSFGQKTKLTRHITTVHDGSQPFECEICHKLFGQSSHLKSHINVVHNGNKPFQCEICHTSFGQQSKLKSHINSVHNSIKSLECNICHKLIGNQSQLKKHTMEIHNLLKPFECDICHKSFGETNKLTRHMTTVHDRSQPFECEICHKSFGQNSHLKSHINVVHHGSKPFECEICHKSFGYQSKLKSHINSVHERSQSFECNICRKSFGNQSQLKSHIFTVHNCSKPFECDICQKSFGEKNKLTRHMETVHEGSKPFECDICHKSFGQNSHLKSHINVVHHGSKPFECEICHKSFGYQSKLKNHITIVHNLINLHESEIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482800;
90% Identity: iTF_01482800;
80% Identity: iTF_01482800;