Tden015813.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000069.1:922733-924223[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0069 0.25 12.6 0.7 2 17 167 182 167 183 0.93 2 9 0.00048 0.018 16.3 0.4 1 23 194 217 194 217 0.95 3 9 3e-06 0.00011 23.2 0.7 1 23 222 245 222 245 0.94 4 9 0.00037 0.013 16.6 0.3 1 23 250 273 250 273 0.94 5 9 5.2e-08 1.9e-06 28.7 1.4 1 23 278 301 278 301 0.96 6 9 4e-06 0.00014 22.8 1.4 1 23 306 329 306 330 0.94 7 9 0.036 1.3 10.4 0.7 1 13 334 346 334 347 0.91 8 9 2.8e-06 0.0001 23.3 1.0 1 23 350 373 350 373 0.95 9 9 2e-07 7.3e-06 26.9 1.2 1 23 378 401 378 401 0.98
Sequence Information
- Coding Sequence
- ATGGAATCTGGCGATTTGTTCAACCGTACCCtcagAGTGAAAGTTGAGCCTTGTGATGTTTCGTTTACcgaaaatgattataaaaccATCGACGAGATACCCGTAACCGAAAATGTCAAGTACGAAaagtttcttcaagaaaactcgacCCAAGAGCTTCAAAAATATGacgaaaatcaagaaaatgaCGACTTGCAAATCGATTTGGAATGTACAAACATGAAGCCCAATTTATTGACAGTGTCGAAAATTGAAGATTACTATTTAAATCACAGGCAAGATATAGCGAAATATAGCGATGATTATAAAGCTGAACGACCAATTAAATTAGAAGCTGTGTGGACGGTGAAGAAAGAATTTTGTGGCGAAGAAGATACTGAGTCGAATTTCGGACGTGGACTCAGCAAGCAAAATGAAAGAGgaagtatttcaaaaaagtcGAACTATAAAATGAATCTCAAAGCACACGTGGGTATGGTGCAAAGTGGTATCAACAATACATGCGATACATGCCAAAAGACGTTCGCAACGAAAGGTAATCTTAAAACCCAAATCGAATCAGTGCATCATAAAATTACGCATCCATGTGATGTATGCCAAAAGACAATCTCAGACAAGAGTAATATCAGAAATCACATCGATTCTGTGCATAATGGTGACAGACATGCGTGCGATATTTGCCAAAAGACGTTCACACAAAAAGGTAGTCTCAAAATACATATCGAATCGGTGCATAATGGTGCCAGTTATGCATGCgatatttgcaaaaatgattttaaacgaAAAGGCGATCTCAAAACTCACGTCGATTCGGTGCATCGTAAAATAAGGCATccatgtgatatatgccaaaagacattctcagACAAGAGTAATCTAAATAAACACATAAATTCGGTGCATAATAGTGTCAGACACGCATGCGAcatttgcggaaagaaattcgtaaaaaaaggtaatctcaaaatccacatcgagtCAGTACATCATGAAATCACGCATCCATGcgatatatgccaaaagacattctcaaCCAAGGGTATCATCTACGCATGTGATTACTGTGGAAAAACATACAAACAATTCTCTAATCTCCTAAAACACGTCCAATTGTCGCATATTAATACCACCTATACTTGCGACACATGCGGAAAGACATTCCGGTATAAACAAAATCTCAAAGCCCATGTGAAAATGGCGCATCGCCCACGCATCGTGACTTAA
- Protein Sequence
- MESGDLFNRTLRVKVEPCDVSFTENDYKTIDEIPVTENVKYEKFLQENSTQELQKYDENQENDDLQIDLECTNMKPNLLTVSKIEDYYLNHRQDIAKYSDDYKAERPIKLEAVWTVKKEFCGEEDTESNFGRGLSKQNERGSISKKSNYKMNLKAHVGMVQSGINNTCDTCQKTFATKGNLKTQIESVHHKITHPCDVCQKTISDKSNIRNHIDSVHNGDRHACDICQKTFTQKGSLKIHIESVHNGASYACDICKNDFKRKGDLKTHVDSVHRKIRHPCDICQKTFSDKSNLNKHINSVHNSVRHACDICGKKFVKKGNLKIHIESVHHEITHPCDICQKTFSTKGIIYACDYCGKTYKQFSNLLKHVQLSHINTTYTCDTCGKTFRYKQNLKAHVKMAHRPRIVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482713;
- 90% Identity
- iTF_01482713;
- 80% Identity
- iTF_01482713;