Tden005702.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000013.1:1666702-1668063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.6e-06 0.00032 21.8 3.6 1 23 136 159 136 159 0.97 2 10 1.1e-06 4e-05 24.6 1.7 1 23 164 187 164 187 0.94 3 10 0.00061 0.022 15.9 1.4 1 23 192 215 192 215 0.95 4 10 0.0002 0.0072 17.5 1.8 1 23 220 243 220 243 0.91 5 10 3.7e-07 1.4e-05 26.1 0.7 1 23 248 271 248 271 0.92 6 10 3.4e-06 0.00012 23.0 1.0 1 23 276 299 276 299 0.91 7 10 0.012 0.45 11.8 0.4 2 18 305 321 305 328 0.92 8 10 1.5e-06 5.5e-05 24.1 0.3 1 23 333 356 333 356 0.92 9 10 6.1e-06 0.00022 22.2 1.5 1 23 361 384 361 384 0.96 10 10 1.2 43 5.6 0.7 1 14 389 402 389 403 0.85
Sequence Information
- Coding Sequence
- ATGGAATCAAGCGATATGTTCAATTGTCTTGTCAGGGTGAAAGAGGAGCCCAGTGATGTGTCGCCCAGTGGgaataattatgaaatgatTGACGAGAAACCCGATCTGATAAACTTCCAACTGTTATCATTTACGCCGGAAAATGCACGGATCCATAACCTTCGAAAATGTGACGGAAATCATAAAAGTAAAGTcaataacgacttgaaaatAGTATTTGAGTGTGAAGATGTGAAACCcaatattaatttatcaatagtTAAGAAAATTGACGAATTGCAGAATGAAAAAGATGGCAACGGTTGTAATACTCAAAACATAAGTAAAATAGACCCCGTAGGAGAAGTGAAACAGGAGATTTTTGCCGAAGTAATTGCAAAAAGTGTTGTGCATAATGAAAAAACCCACGAATGTAAAGTATGTAGAAAGAAATTCTCAAGTAAGAGTTATCTGAAAACGCACATTGATACGATTCATAATGGTACACGCCACGTATGTGATAGTTGcggaaagtcattttcacgAAAAGGTCATCTCAAAATCCATATCAATGCGGTGCATAACGATGTTACTCATGCATGCGAtatttgcgaaaagaaattctcacTGAAGAATGTTCTCAAGACACACATCAAGTCGGTGCATGATAAAATCACTCATGCGTGTGATATGTGCGAAAAGAAGTTCTCTCATAAGAGCGCTgtcaaaaaacacatcgatgcagtgcataataaaatcattcatgaatgtgatatttgcggaaagaagtACTCGCAGAAGAGTGATCTCAAAAGACACATTGATGCagcgcacaatggtgtcacacataattgtgatatttgcggaaagaagtACTCGCAGAAGACGGATCTCAAAAGACACATTGATGCAGCGCACAATAGTGTCACACGTACTTGTGAtatatgcaaaaagaaattctcCAGTATCGGCAATCTAAAAAAACAGCACATCGATTCCGTGCATGATAAAATTGTacatgaatgtgatatttgcggcaAGTCATTTACTCAAAGAGTAagtctcaaaattcacattgaCGCAGTGCACAATGGAGTCATACATACATGTGGAAACTGCAGGAAAGAATTCACAACTAAGGGTAATCTCCAAGTTCACATCAGGGCGAATCATAATGGTATCAGTCATGCATGCAATGTATGCAGCAgaacattttacaaaaaagtaaactaA
- Protein Sequence
- MESSDMFNCLVRVKEEPSDVSPSGNNYEMIDEKPDLINFQLLSFTPENARIHNLRKCDGNHKSKVNNDLKIVFECEDVKPNINLSIVKKIDELQNEKDGNGCNTQNISKIDPVGEVKQEIFAEVIAKSVVHNEKTHECKVCRKKFSSKSYLKTHIDTIHNGTRHVCDSCGKSFSRKGHLKIHINAVHNDVTHACDICEKKFSLKNVLKTHIKSVHDKITHACDMCEKKFSHKSAVKKHIDAVHNKIIHECDICGKKYSQKSDLKRHIDAAHNGVTHNCDICGKKYSQKTDLKRHIDAAHNSVTRTCDICKKKFSSIGNLKKQHIDSVHDKIVHECDICGKSFTQRVSLKIHIDAVHNGVIHTCGNCRKEFTTKGNLQVHIRANHNGISHACNVCSRTFYKKVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482768;
- 90% Identity
- iTF_01482768;
- 80% Identity
- iTF_01482768;