Tden013214.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000050.1:427929-429482[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2e-05 0.00075 20.6 0.3 1 23 162 185 162 185 0.96 2 11 2.2e-05 0.00081 20.5 0.1 1 17 190 206 190 207 0.95 3 11 8.1e-05 0.003 18.7 0.6 1 23 218 241 218 241 0.92 4 11 0.00023 0.0085 17.3 1.6 1 23 246 269 246 269 0.94 5 11 4.2e-05 0.0015 19.6 1.3 1 23 274 297 274 297 0.94 6 11 3.9e-06 0.00014 22.9 0.7 1 23 302 325 302 325 0.97 7 11 0.0036 0.13 13.5 0.9 1 23 330 353 330 353 0.94 8 11 2.6e-05 0.00094 20.3 1.2 1 23 358 381 358 381 0.94 9 11 2.6e-06 9.4e-05 23.4 0.7 1 23 386 409 386 409 0.97 10 11 1.8e-05 0.00065 20.8 2.4 1 23 414 437 414 437 0.95 11 11 8.6e-07 3.2e-05 24.9 0.9 1 23 442 465 442 465 0.94
Sequence Information
- Coding Sequence
- ATGGAATCCAGAGATGTACTTAATTCTGCTGTCAGGGTAAAAGAGGAGCCTGGTGACGAATCGCTCATTGAAAACGATTACGAAGCAATTGACGAGAAACCCGATCCGAAAAACTTTCAACTCTGGCCATTTTCGCAAGAAACTTCCACTTATACTATTCGAAAATGTGACATTAAACTTGAAAGTGAACTTGATAACGAAGTGGAAATAGTCGTTGAATGTGAAGACGTCAAGCCCAACTTTGATTTATTGACAATTCAGAATGTTGGccatgattttcaaaatcacttGGGCAATGTGAAAGATACGTTTAAAAAAGAACCTGCAGAGGAAGTGGTACAAGAAACTGATGCTGCAGaacaattgaatttaaatctCGACTTCAAACCCGTCGAACAAAGTAAAAAACGAAGTATTACAAAAGAGTCAGACCatcaacataaaattaaaaatcagatTGATAAGGTGCATAGTGGTGGTGTCTACGCGTGTGAAATATGtggaaaaacatttaaatataaaagtaatattggAACTCACGTAAATTCGgtgcataaaaaaatctcttacatatgtgatatttgcggaaagactTTTTCAAGGAAAGATAATCTCAAAATCGACATTGAAGGGGTGCACTGTGGTGTCAAACATCcgtgtgatatttgcggaaagttattttcaaaaaaaagtaatatcaaAACCCACATCGATGAGGTACATAATGGGATTACCCACTCATGTGATGTTTGCAGAAAATCGTTTCCAAATAAAACTAGTCTTATAAACCATAACAATTCggtgcataaaaaaataacacatgCATGCAATttatgcgaaaagaaattctcaaCCAAGACGTATCTCAAAGTTCACATTGATGtggtgcacaatggtgtcagaTATACGTGCAATATATGTGGAAGGACGTATAAAGGAAAGAGTGAACTGTATAAGCACGTTCAATCAGTACATAATGGTGTCAAACATCCATGCGATGTTTGCAGAAAATTGTTTCCAAATAAAACTAGTCTTATAAACCATAACAATTCggtgcataaaaaaataacacatgCATGCAATttatgcgaaaagaaattctcaaCCAAGACGTATCTCAAAGCTCACATCGATGtggtgcacaatggtgtcagaTATTCATGCAATATATGTGGAAAGACGTATAAAGGAAAGAGTGAACTGTATAAGCATGTTCAATCAGTACACAATGGTGTCAAACAtccatgtgatatttgcggaaagtcATATACTCAGAAAAAATGTCTCAAAATCCATATCGATTCAGTGCACAAGTGTCGTAAACATGCATGTGACATTTGTGGAAAGACATTTACACAGAAGTATTATCttaaaatccacatcgattcagTACATCCCTCATAA
- Protein Sequence
- MESRDVLNSAVRVKEEPGDESLIENDYEAIDEKPDPKNFQLWPFSQETSTYTIRKCDIKLESELDNEVEIVVECEDVKPNFDLLTIQNVGHDFQNHLGNVKDTFKKEPAEEVVQETDAAEQLNLNLDFKPVEQSKKRSITKESDHQHKIKNQIDKVHSGGVYACEICGKTFKYKSNIGTHVNSVHKKISYICDICGKTFSRKDNLKIDIEGVHCGVKHPCDICGKLFSKKSNIKTHIDEVHNGITHSCDVCRKSFPNKTSLINHNNSVHKKITHACNLCEKKFSTKTYLKVHIDVVHNGVRYTCNICGRTYKGKSELYKHVQSVHNGVKHPCDVCRKLFPNKTSLINHNNSVHKKITHACNLCEKKFSTKTYLKAHIDVVHNGVRYSCNICGKTYKGKSELYKHVQSVHNGVKHPCDICGKSYTQKKCLKIHIDSVHKCRKHACDICGKTFTQKYYLKIHIDSVHPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482691;
- 90% Identity
- iTF_01482691;
- 80% Identity
- iTF_01482691;