Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000004.1:741239-742823[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.4e-06 5.2e-05 24.2 0.8 1 23 172 195 172 196 0.95

2 11 2.2e-05 0.0008 20.5 0.9 1 23 200 223 200 223 0.94

3 11 6.3e-08 2.3e-06 28.5 0.6 2 23 229 251 229 251 0.97

4 11 3.8e-07 1.4e-05 26.0 2.7 1 23 257 280 257 280 0.97

5 11 4.3e-05 0.0016 19.6 6.0 2 23 286 308 285 308 0.95

6 11 3e-08 1.1e-06 29.5 0.5 1 23 314 337 314 337 0.97

7 11 3.9e-05 0.0014 19.7 2.1 1 23 343 366 343 366 0.95

8 11 2.1e-05 0.00079 20.5 1.4 1 23 371 394 371 394 0.95

9 11 4.2e-05 0.0016 19.6 2.8 1 23 400 423 400 423 0.97

10 11 1.8e-05 0.00064 20.8 1.9 1 23 428 451 428 451 0.97

11 11 0.00036 0.013 16.6 0.3 1 23 457 480 457 480 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.4e-06	5.2e-05	24.2	0.8	1	23	172	195	172	196	0.95
2	11	2.2e-05	0.0008	20.5	0.9	1	23	200	223	200	223	0.94
3	11	6.3e-08	2.3e-06	28.5	0.6	2	23	229	251	229	251	0.97
4	11	3.8e-07	1.4e-05	26.0	2.7	1	23	257	280	257	280	0.97
5	11	4.3e-05	0.0016	19.6	6.0	2	23	286	308	285	308	0.95
6	11	3e-08	1.1e-06	29.5	0.5	1	23	314	337	314	337	0.97
7	11	3.9e-05	0.0014	19.7	2.1	1	23	343	366	343	366	0.95
8	11	2.1e-05	0.00079	20.5	1.4	1	23	371	394	371	394	0.95
9	11	4.2e-05	0.0016	19.6	2.8	1	23	400	423	400	423	0.97
10	11	1.8e-05	0.00064	20.8	1.9	1	23	428	451	428	451	0.97
11	11	0.00036	0.013	16.6	0.3	1	23	457	480	457	480	0.96

Sequence Information

Coding Sequence: ATGGAATCGAGTGTAATATTTAACAGTGGTGTCAGAGTTAAAGAAGAACCAATCGACGTGTTGCTCGGTGAAAATGATTACATTGTAATTGACAAGACACCCGAtgtcaacaattttcaattactcaGGCATCCGCAAGAAAATCGAATTCTCGTGCTTCAAAAATCTGACGAAAATCACGAAAGTGAACTTTACGATTTGGCAATCGAGTTGGAATGTAAAGACATGAAGCCGAGCGTGGATTTATTAGCAGttacgaaaattgaaaattggtcTGAAGATCACTTGGTGGCTATTGAAAATAGTAATGAATATCaacctcaaaaaataataaaaaaagaaaccgtcacgaaagtgaaaaaagagatttttgaCGACGTTCCGAAAGAATTTGATATGAATTCCAATTGCGGAGTCAGCGAgccaaataaaagaaaaacagttGTAAAAAATGGGGATTATGAACATaaactcaaaaaacacattgttGACATGCCGAATGGTAAAATCGCATATCCTTGTGATACATGTGGAAAGGCATTTTCACAGAAACGTTCTCTCAAAGTTCACATCGACTCGGTGCACCATAAAATCACTCATGCCTGTGATGTATGTGAAAAGTCATTCTCATTCAAAAgttatctcaaaatccacatcgattccGCACATAATGGTAAAACTCCCAAATGCGATATCTGCGGAAAGACGTTTTCTCAAAAGGGTAATCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAACGATCATTTGAAAACTCATACCAATTCCATGCATAAAGGCATCATCTGCTCATGCAATTTTTGCGGAAAGACGTTCTCGTACAAGTGTAATCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGGTAATCTTCGCACCCACATCAACTCAGTGCATAATAGTCAAAAAAGTTACGAATGTGGCGTGTGTGGCAAGAAGTTCTCGCGAAAGCATGTTCTGAAAACTCATACCGATTCgatgcataatggtatcaccTACCCATGCGATTGTTGCGGAAAAACATTTTCCCAAAAATGGAATTTAAAAACTCACATCGATTCGATACATAATggtcgaaaaaattatgaatgtgACGAGTGTAACAAGAAGTTCTTGCGAAAGGATCATCTGAAAAGTCATATCAATTCAATGCATAAAGGTATCACTTACCCATGCAATTtctgtgagaaaaaatataagaatcaAACAAATCTCATTAAACATGTCAAATCGTCGCATGCAAGTAATACCCCCTACccatgtgataaatgcggcAAATCATTTTTACTAAAGAATACTCTTAAAAAGCACATTGACGTGGCTCATCGCTGA
Protein Sequence: MESSVIFNSGVRVKEEPIDVLLGENDYIVIDKTPDVNNFQLLRHPQENRILVLQKSDENHESELYDLAIELECKDMKPSVDLLAVTKIENWSEDHLVAIENSNEYQPQKIIKKETVTKVKKEIFDDVPKEFDMNSNCGVSEPNKRKTVVKNGDYEHKLKKHIVDMPNGKIAYPCDTCGKAFSQKRSLKVHIDSVHHKITHACDVCEKSFSFKSYLKIHIDSAHNGKTPKCDICGKTFSQKGNLQTHINSVHNSQKSYECDVCGKKFSRNDHLKTHTNSMHKGIICSCNFCGKTFSYKCNLQTHINSVHNSQKSYECDVCGKKFSRKGNLRTHINSVHNSQKSYECGVCGKKFSRKHVLKTHTDSMHNGITYPCDCCGKTFSQKWNLKTHIDSIHNGRKNYECDECNKKFLRKDHLKSHINSMHKGITYPCNFCEKKYKNQTNLIKHVKSSHASNTPYPCDKCGKSFLLKNTLKKHIDVAHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482673;
90% Identity: iTF_01482673;
80% Identity: iTF_01482673;