Tden002366.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:741239-742823[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.36 71 4.3 0.7 3 43 158 195 156 196 0.69 2 11 1.1 2.1e+02 2.8 0.4 19 44 202 224 197 224 0.91 3 11 0.00064 0.13 13.1 0.2 18 44 229 252 225 252 0.92 4 11 0.031 6.1 7.7 1.7 15 43 255 280 253 281 0.76 5 11 0.0014 0.27 12.0 4.2 18 44 286 309 282 309 0.93 6 11 6.7e-05 0.013 16.3 0.7 15 44 312 338 310 338 0.91 7 11 0.0055 1.1 10.1 1.5 15 43 341 366 339 367 0.76 8 11 0.05 9.8 7.1 0.6 19 44 373 395 371 395 0.92 9 11 0.16 31 5.4 2.8 15 44 398 424 396 424 0.91 10 11 3.4e-05 0.0067 17.2 0.8 19 43 430 451 428 452 0.95 11 11 1.8 3.6e+02 2.1 0.1 19 43 459 480 454 481 0.86
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGTAATATTTAACAGTGGTGTCAGAGTTAAAGAAGAACCAATCGACGTGTTGCTCGGTGAAAATGATTACATTGTAATTGACAAGACACCCGAtgtcaacaattttcaattactcaGGCATCCGCAAGAAAATCGAATTCTCGTGCTTCAAAAATCTGACGAAAATCACGAAAGTGAACTTTACGATTTGGCAATCGAGTTGGAATGTAAAGACATGAAGCCGAGCGTGGATTTATTAGCAGttacgaaaattgaaaattggtcTGAAGATCACTTGGTGGCTATTGAAAATAGTAATGAATATCaacctcaaaaaataataaaaaaagaaaccgtcacgaaagtgaaaaaagagatttttgaCGACGTTCCGAAAGAATTTGATATGAATTCCAATTGCGGAGTCAGCGAgccaaataaaagaaaaacagttGTAAAAAATGGGGATTATGAACATaaactcaaaaaacacattgttGACATGCCGAATGGTAAAATCGCATATCCTTGTGATACATGTGGAAAGGCATTTTCACAGAAACGTTCTCTCAAAGTTCACATCGACTCGGTGCACCATAAAATCACTCATGCCTGTGATGTATGTGAAAAGTCATTCTCATTCAAAAgttatctcaaaatccacatcgattccGCACATAATGGTAAAACTCCCAAATGCGATATCTGCGGAAAGACGTTTTCTCAAAAGGGTAATCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAACGATCATTTGAAAACTCATACCAATTCCATGCATAAAGGCATCATCTGCTCATGCAATTTTTGCGGAAAGACGTTCTCGTACAAGTGTAATCTCCAAACCCACATCAACTCGGTTCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGGGTAATCTTCGCACCCACATCAACTCAGTGCATAATAGTCAAAAAAGTTACGAATGTGGCGTGTGTGGCAAGAAGTTCTCGCGAAAGCATGTTCTGAAAACTCATACCGATTCgatgcataatggtatcaccTACCCATGCGATTGTTGCGGAAAAACATTTTCCCAAAAATGGAATTTAAAAACTCACATCGATTCGATACATAATggtcgaaaaaattatgaatgtgACGAGTGTAACAAGAAGTTCTTGCGAAAGGATCATCTGAAAAGTCATATCAATTCAATGCATAAAGGTATCACTTACCCATGCAATTtctgtgagaaaaaatataagaatcaAACAAATCTCATTAAACATGTCAAATCGTCGCATGCAAGTAATACCCCCTACccatgtgataaatgcggcAAATCATTTTTACTAAAGAATACTCTTAAAAAGCACATTGACGTGGCTCATCGCTGA
- Protein Sequence
- MESSVIFNSGVRVKEEPIDVLLGENDYIVIDKTPDVNNFQLLRHPQENRILVLQKSDENHESELYDLAIELECKDMKPSVDLLAVTKIENWSEDHLVAIENSNEYQPQKIIKKETVTKVKKEIFDDVPKEFDMNSNCGVSEPNKRKTVVKNGDYEHKLKKHIVDMPNGKIAYPCDTCGKAFSQKRSLKVHIDSVHHKITHACDVCEKSFSFKSYLKIHIDSAHNGKTPKCDICGKTFSQKGNLQTHINSVHNSQKSYECDVCGKKFSRNDHLKTHTNSMHKGIICSCNFCGKTFSYKCNLQTHINSVHNSQKSYECDVCGKKFSRKGNLRTHINSVHNSQKSYECGVCGKKFSRKHVLKTHTDSMHNGITYPCDCCGKTFSQKWNLKTHIDSIHNGRKNYECDECNKKFLRKDHLKSHINSMHKGITYPCNFCEKKYKNQTNLIKHVKSSHASNTPYPCDKCGKSFLLKNTLKKHIDVAHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482863;
- 90% Identity
- iTF_01482863;
- 80% Identity
- iTF_01482863;