Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000004.1:2656371-2658147[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.8 67 5.0 0.1 5 22 162 179 161 179 0.91

2 11 3.6e-06 0.00013 22.9 1.5 1 23 186 209 186 209 0.95

3 11 1.4e-06 5.2e-05 24.2 2.0 1 23 214 237 214 237 0.97

4 11 0.00012 0.0045 18.1 2.5 1 23 242 265 242 265 0.96

5 11 2.3e-07 8.6e-06 26.7 0.8 1 23 270 293 270 293 0.97

6 11 4.2e-06 0.00015 22.7 3.1 1 23 298 321 298 321 0.97

7 11 1.5e-06 5.7e-05 24.1 1.4 1 23 326 349 326 349 0.95

8 11 7.2e-05 0.0026 18.9 2.6 1 23 354 377 354 377 0.96

9 11 4.2e-08 1.5e-06 29.1 0.8 1 23 382 405 382 405 0.96

10 11 1.3e-06 4.7e-05 24.4 1.4 1 23 410 433 410 433 0.97

11 11 2.4e-07 8.7e-06 26.7 2.8 1 23 438 461 438 461 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.8	67	5.0	0.1	5	22	162	179	161	179	0.91
2	11	3.6e-06	0.00013	22.9	1.5	1	23	186	209	186	209	0.95
3	11	1.4e-06	5.2e-05	24.2	2.0	1	23	214	237	214	237	0.97
4	11	0.00012	0.0045	18.1	2.5	1	23	242	265	242	265	0.96
5	11	2.3e-07	8.6e-06	26.7	0.8	1	23	270	293	270	293	0.97
6	11	4.2e-06	0.00015	22.7	3.1	1	23	298	321	298	321	0.97
7	11	1.5e-06	5.7e-05	24.1	1.4	1	23	326	349	326	349	0.95
8	11	7.2e-05	0.0026	18.9	2.6	1	23	354	377	354	377	0.96
9	11	4.2e-08	1.5e-06	29.1	0.8	1	23	382	405	382	405	0.96
10	11	1.3e-06	4.7e-05	24.4	1.4	1	23	410	433	410	433	0.97
11	11	2.4e-07	8.7e-06	26.7	2.8	1	23	438	461	438	461	0.96

Sequence Information

Coding Sequence: ATGGAACCCATTGGCTTGCTTAATTTCGCTGTgagagTGAAGGAGGAACCTGAAGAGGTGTCGCTAATTAAAGATAATTGTAACGTAATTGACAAGACACTCGATactaacaattttcatttctcagGATTTCAAGGAAGTCCGactTATGGGCTTCGAGAAAACAACAAATATCACGAAAATCAACTCAACGAGTTGGCAATCGTGTTTGAATGTAGAGACATGAAGCCGAGCGTGGATTTATTAGTAGTTACGAAAATTGAGGATCCTTCTTCAAATCACTTGCAAGATATGAATTACTGCAACTATTTTCAAgcacaaaacaaaattaaaacagAAATTGTagatgaagtaaaaaaagaattgaatcCGAATTATGAACCCAGCCATGTATTTCAGACAAGTGGAAAAACATTTACCCAGAAAGGTTATCTCGAAACCGACAGTGGTAGGGTACTCAGTGACGTCAGACAAACGCGCAATACATGCAGAAAGAAATTCACAAAAGAAGATAGTCTACCTGTTCACATCAAAACGGTACGTAATGGCATCAAACATGCATGTGACACATGCGGAAAGACATACAATCAAAAGGGTGATCTCAATAGGCACGTACGATCATCGCACCAAGGTATCATTCACACATGTGATGCATGTGGAAAGACGTTTACTCGAAAAGCTACTCTTGAAAGGCACATAAAATCATCGCACCAAGGTATCACCTACACCTGCAATGCATGCGGAAAGAAATGTACGCAAAAAAACTATCTCCGAATGCATATGAATGCGGTACATGATAAAATCACCTATCCATGCAGTGTATGTGAAAAGCAATTCTCAGATAAGAGTAATCTCAATAAGCACGTACGATCATCGCATGAAGGTATTACCCACACATGTGATATCTGCGGAAAGTCTTACAATCATAAGGCTAATCTTGATAGGCACGTACGATCATCTCACCAAGTCATTACCCACGCATGTGATATCTGCGGAAAGACGTTTACTCGAACAACTGCTCTTGAAAGGCACCTAAAATCATCGCACCAAGGTATCACCTACACCTGCAATgcatgcggaaagaaattttcacataaaaagAATCGCCGAATCCATATGAATGCGgtacataataaaatcacCTATCCTTGCAGTATATGCGGGAAGAAATTCTCATATAAGAGTAATCTCAGAAagcacatcgattcggtgcaccAAGGTATCTTTCACACATGTGATATCTGCGGAAAGTCATACAATCAAAAGGCTAATCTTGATAGGCACGTACGATCATCGCACCAAGGTATCACCCACACATGTGATacatgcggaaagaaattctcgGATAAGAGTAATCTCAGAAAGCACGTCAATTCGGTGCACCAAAATATCAGCCACACGCGATATGTGCGGGAAGACATTCGCAAGAAATAA
Protein Sequence: MEPIGLLNFAVRVKEEPEEVSLIKDNCNVIDKTLDTNNFHFSGFQGSPTYGLRENNKYHENQLNELAIVFECRDMKPSVDLLVVTKIEDPSSNHLQDMNYCNYFQAQNKIKTEIVDEVKKELNPNYEPSHVFQTSGKTFTQKGYLETDSGRVLSDVRQTRNTCRKKFTKEDSLPVHIKTVRNGIKHACDTCGKTYNQKGDLNRHVRSSHQGIIHTCDACGKTFTRKATLERHIKSSHQGITYTCNACGKKCTQKNYLRMHMNAVHDKITYPCSVCEKQFSDKSNLNKHVRSSHEGITHTCDICGKSYNHKANLDRHVRSSHQVITHACDICGKTFTRTTALERHLKSSHQGITYTCNACGKKFSHKKNRRIHMNAVHNKITYPCSICGKKFSYKSNLRKHIDSVHQGIFHTCDICGKSYNQKANLDRHVRSSHQGITHTCDTCGKKFSDKSNLRKHVNSVHQNISHTRYVREDIRKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482662;
90% Identity: iTF_01482662;
80% Identity: iTF_01482662;