Tden002621.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:2656371-2658147[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.2 40 5.1 2.2 18 44 187 210 176 210 0.86 2 10 0.0039 0.78 10.6 1.1 18 44 215 238 212 238 0.93 3 10 1 2e+02 2.9 3.1 18 43 243 265 241 266 0.86 4 10 0.0022 0.42 11.4 0.2 19 43 272 293 268 294 0.95 5 10 0.011 2.1 9.2 3.2 18 44 299 322 297 322 0.95 6 10 4.3e-05 0.0084 16.9 1.3 19 44 328 350 326 350 0.96 7 10 0.45 89 4.0 4.0 18 43 355 377 353 378 0.80 8 10 2.7e-05 0.0054 17.5 1.4 19 44 384 406 377 406 0.93 9 10 0.0012 0.23 12.3 0.9 18 44 411 434 408 434 0.94 10 10 0.0005 0.098 13.5 1.4 18 44 439 462 437 462 0.95
Sequence Information
- Coding Sequence
- ATGGAACCCATTGGCTTGCTTAATTTCGCTGTgagagTGAAGGAGGAACCTGAAGAGGTGTCGCTAATTAAAGATAATTGTAACGTAATTGACAAGACACTCGATactaacaattttcatttctcagGATTTCAAGGAAGTCCGactTATGGGCTTCGAGAAAACAACAAATATCACGAAAATCAACTCAACGAGTTGGCAATCGTGTTTGAATGTAGAGACATGAAGCCGAGCGTGGATTTATTAGTAGTTACGAAAATTGAGGATCCTTCTTCAAATCACTTGCAAGATATGAATTACTGCAACTATTTTCAAgcacaaaacaaaattaaaacagAAATTGTagatgaagtaaaaaaagaattgaatcCGAATTATGAACCCAGCCATGTATTTCAGACAAGTGGAAAAACATTTACCCAGAAAGGTTATCTCGAAACCGACAGTGGTAGGGTACTCAGTGACGTCAGACAAACGCGCAATACATGCAGAAAGAAATTCACAAAAGAAGATAGTCTACCTGTTCACATCAAAACGGTACGTAATGGCATCAAACATGCATGTGACACATGCGGAAAGACATACAATCAAAAGGGTGATCTCAATAGGCACGTACGATCATCGCACCAAGGTATCATTCACACATGTGATGCATGTGGAAAGACGTTTACTCGAAAAGCTACTCTTGAAAGGCACATAAAATCATCGCACCAAGGTATCACCTACACCTGCAATGCATGCGGAAAGAAATGTACGCAAAAAAACTATCTCCGAATGCATATGAATGCGGTACATGATAAAATCACCTATCCATGCAGTGTATGTGAAAAGCAATTCTCAGATAAGAGTAATCTCAATAAGCACGTACGATCATCGCATGAAGGTATTACCCACACATGTGATATCTGCGGAAAGTCTTACAATCATAAGGCTAATCTTGATAGGCACGTACGATCATCTCACCAAGTCATTACCCACGCATGTGATATCTGCGGAAAGACGTTTACTCGAACAACTGCTCTTGAAAGGCACCTAAAATCATCGCACCAAGGTATCACCTACACCTGCAATgcatgcggaaagaaattttcacataaaaagAATCGCCGAATCCATATGAATGCGgtacataataaaatcacCTATCCTTGCAGTATATGCGGGAAGAAATTCTCATATAAGAGTAATCTCAGAAagcacatcgattcggtgcaccAAGGTATCTTTCACACATGTGATATCTGCGGAAAGTCATACAATCAAAAGGCTAATCTTGATAGGCACGTACGATCATCGCACCAAGGTATCACCCACACATGTGATacatgcggaaagaaattctcgGATAAGAGTAATCTCAGAAAGCACGTCAATTCGGTGCACCAAAATATCAGCCACACGCGATATGTGCGGGAAGACATTCGCAAGAAATAA
- Protein Sequence
- MEPIGLLNFAVRVKEEPEEVSLIKDNCNVIDKTLDTNNFHFSGFQGSPTYGLRENNKYHENQLNELAIVFECRDMKPSVDLLVVTKIEDPSSNHLQDMNYCNYFQAQNKIKTEIVDEVKKELNPNYEPSHVFQTSGKTFTQKGYLETDSGRVLSDVRQTRNTCRKKFTKEDSLPVHIKTVRNGIKHACDTCGKTYNQKGDLNRHVRSSHQGIIHTCDACGKTFTRKATLERHIKSSHQGITYTCNACGKKCTQKNYLRMHMNAVHDKITYPCSVCEKQFSDKSNLNKHVRSSHEGITHTCDICGKSYNHKANLDRHVRSSHQVITHACDICGKTFTRTTALERHLKSSHQGITYTCNACGKKFSHKKNRRIHMNAVHNKITYPCSICGKKFSYKSNLRKHIDSVHQGIFHTCDICGKSYNQKANLDRHVRSSHQGITHTCDTCGKKFSDKSNLRKHVNSVHQNISHTRYVREDIRKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482860;
- 90% Identity
- iTF_01482860;
- 80% Identity
- iTF_01482860;