Tden003578.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000006.1:2695436-2697113[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.6 1.3e+02 4.1 0.1 8 21 150 163 149 164 0.89 2 13 3.5e-06 0.00013 23.0 2.3 1 23 170 193 170 193 0.96 3 13 3.3e-05 0.0012 19.9 0.5 1 23 198 221 198 221 0.96 4 13 5.3e-05 0.002 19.3 0.3 1 23 226 249 226 249 0.93 5 13 1e-05 0.00038 21.5 1.4 2 23 255 277 254 277 0.94 6 13 1.2e-07 4.5e-06 27.6 2.1 1 23 282 305 282 305 0.95 7 13 1.8e-06 6.7e-05 23.9 1.0 1 23 310 333 310 333 0.96 8 13 0.029 1.1 10.7 0.4 8 23 345 361 344 361 0.94 9 13 2e-06 7.3e-05 23.8 1.5 1 23 366 389 366 389 0.95 10 13 3.3e-07 1.2e-05 26.2 2.6 1 23 394 417 394 417 0.96 11 13 2e-06 7.3e-05 23.8 1.5 1 23 422 445 422 445 0.95 12 13 9.6e-06 0.00035 21.6 1.0 1 23 450 473 450 473 0.94 13 13 1.6e-05 0.00058 20.9 6.0 1 23 478 501 478 501 0.94
Sequence Information
- Coding Sequence
- ATGGAATCCAATCATATGTTTAACTCTGATAtcagAGTTAAAGAGGAACCAAGCGATGTGCCGTCTGTAGAAAATAATTGTGAAGCGATTGACGAGAAACCCGATCTAAAAAACGTCCAACTATCATTATTTCCACGAGAGAATTCGACCTATACCCCTCAAAAGTGTGAAGAAAATCACGAAAGTGAACTTGACGATGAAGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCCAACATTAATTCGttagcagtaaaaaaaattgattgttctCAAAATCTCTTGCGGAACATGAAAAACAGATGTGGCCGTAAGACTGAAAACGTAATTAAAGTAGAAACCACAGGAGAAGTGAAACAGGAATTTTCTAGTGACATTTCAGAAGAATCGAATTTCAATTTGGACTGTGAACTTGTTGAGCGAAacacaagaagaaaaatagaaaaaaagtataacaacgaacataacctcaaaacacacATCGATACAGATAATGTTACAGCCCACCCATGTAAAATATGCGAAAAGACTTATAAACGAAAGAGTTATCTGAATTCGCATATTCAATCAGCCCATCAAGGTATCACCTACTCATGCGATATATGCAGAAAGAAATTTTCTCAAACAGGTACTCTTAAAGtgcacatcgattcggtgcacaCTAGAGTTACCTATTCATGTGATATCTGCGGAAATTCATTTACTCAAAAAAGTagtatcaaaactcatatCGATGCGATGCACAATGGAGTTACCTGTTCATGCGATATTTGtgggaaaaaatattcaaataaaggTAGTCTCAAAACCCACATAGATTcggtgcacaatggtgtcacacatGCATGCAATACGTGTGGAAAGTCATTCACtcaaaaaagtaatctcaaaactcacatcgatACGGTACATAATGGTGTCAAATACGCATGtcatatttgcggaaagaaaaTCTCGACTAaaagtaatctcaaaactcacatcgaATCGGTGCACAATGGTGTAAAACAAATATGCATTACACGTAGAAAGTCATTTACTCAGAAAACTAATCTCCAAAGTCACATAGACATGGTGCATAAAGGTGTCACTCacgcatgtgatatttgtagaaagaaattttcaagcaagagtaatctcaaaatccacatcgatactgtgcacaatggtgtcacacatACGTGCAATACGTGTGGAAAGTCATTCACTCAAAAAAGTagtctcaaaactcacatagACATGGTGCATAAAGGTGTCACTCacgcatgtgatatttgtagaaagaaattttcaagcaagagtaatctcaaaatccacatcgatactgtgcacaatggtgtcactcactcatgtgatatttgcgaaAAGACGTTTTCCAAAAAAGGTAATCTCCAAAGTCACGTAGACATGGTGCATAAAGGTGTCActcatgcatgtgatatttgcggcaAGACATTCAAACGAAAAGATTAtcttaaaaaacataaacataAGATGCACGATGAATTCACCCACTGA
- Protein Sequence
- MESNHMFNSDIRVKEEPSDVPSVENNCEAIDEKPDLKNVQLSLFPRENSTYTPQKCEENHESELDDEVEIVVECEDVKPNINSLAVKKIDCSQNLLRNMKNRCGRKTENVIKVETTGEVKQEFSSDISEESNFNLDCELVERNTRRKIEKKYNNEHNLKTHIDTDNVTAHPCKICEKTYKRKSYLNSHIQSAHQGITYSCDICRKKFSQTGTLKVHIDSVHTRVTYSCDICGNSFTQKSSIKTHIDAMHNGVTCSCDICGKKYSNKGSLKTHIDSVHNGVTHACNTCGKSFTQKSNLKTHIDTVHNGVKYACHICGKKISTKSNLKTHIESVHNGVKQICITRRKSFTQKTNLQSHIDMVHKGVTHACDICRKKFSSKSNLKIHIDTVHNGVTHTCNTCGKSFTQKSSLKTHIDMVHKGVTHACDICRKKFSSKSNLKIHIDTVHNGVTHSCDICEKTFSKKGNLQSHVDMVHKGVTHACDICGKTFKRKDYLKKHKHKMHDEFTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482666;
- 90% Identity
- iTF_01482666;
- 80% Identity
- iTF_01482666;