Tden003578.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000006.1:2695436-2697113[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.58 1.1e+02 3.6 0.1 27 44 145 171 126 171 0.75 2 12 0.00015 0.03 15.1 1.4 19 44 172 194 168 194 0.94 3 12 0.019 3.8 8.4 0.3 19 43 200 221 197 222 0.91 4 12 0.43 85 4.1 0.4 19 43 228 249 224 250 0.76 5 12 0.0033 0.64 10.8 1.2 18 44 255 278 251 278 0.85 6 12 0.0015 0.29 12.0 1.7 19 44 284 306 281 306 0.95 7 12 7.9e-05 0.016 16.0 2.6 18 44 311 334 308 334 0.93 8 12 0.0015 0.29 12.0 1.2 19 44 368 390 364 390 0.94 9 12 0.073 14 6.5 2.1 18 44 395 418 393 418 0.89 10 12 0.0021 0.41 11.5 1.6 19 44 424 446 421 446 0.94 11 12 0.081 16 6.4 0.6 19 43 452 473 450 474 0.79 12 12 0.22 44 5.0 1.1 19 29 480 490 476 501 0.82
Sequence Information
- Coding Sequence
- ATGGAATCCAATCATATGTTTAACTCTGATAtcagAGTTAAAGAGGAACCAAGCGATGTGCCGTCTGTAGAAAATAATTGTGAAGCGATTGACGAGAAACCCGATCTAAAAAACGTCCAACTATCATTATTTCCACGAGAGAATTCGACCTATACCCCTCAAAAGTGTGAAGAAAATCACGAAAGTGAACTTGACGATGAAGTGGAAATAGTTGTTGAATGTGAAGACGTCAAGCCCAACATTAATTCGttagcagtaaaaaaaattgattgttctCAAAATCTCTTGCGGAACATGAAAAACAGATGTGGCCGTAAGACTGAAAACGTAATTAAAGTAGAAACCACAGGAGAAGTGAAACAGGAATTTTCTAGTGACATTTCAGAAGAATCGAATTTCAATTTGGACTGTGAACTTGTTGAGCGAAacacaagaagaaaaatagaaaaaaagtataacaacgaacataacctcaaaacacacATCGATACAGATAATGTTACAGCCCACCCATGTAAAATATGCGAAAAGACTTATAAACGAAAGAGTTATCTGAATTCGCATATTCAATCAGCCCATCAAGGTATCACCTACTCATGCGATATATGCAGAAAGAAATTTTCTCAAACAGGTACTCTTAAAGtgcacatcgattcggtgcacaCTAGAGTTACCTATTCATGTGATATCTGCGGAAATTCATTTACTCAAAAAAGTagtatcaaaactcatatCGATGCGATGCACAATGGAGTTACCTGTTCATGCGATATTTGtgggaaaaaatattcaaataaaggTAGTCTCAAAACCCACATAGATTcggtgcacaatggtgtcacacatGCATGCAATACGTGTGGAAAGTCATTCACtcaaaaaagtaatctcaaaactcacatcgatACGGTACATAATGGTGTCAAATACGCATGtcatatttgcggaaagaaaaTCTCGACTAaaagtaatctcaaaactcacatcgaATCGGTGCACAATGGTGTAAAACAAATATGCATTACACGTAGAAAGTCATTTACTCAGAAAACTAATCTCCAAAGTCACATAGACATGGTGCATAAAGGTGTCACTCacgcatgtgatatttgtagaaagaaattttcaagcaagagtaatctcaaaatccacatcgatactgtgcacaatggtgtcacacatACGTGCAATACGTGTGGAAAGTCATTCACTCAAAAAAGTagtctcaaaactcacatagACATGGTGCATAAAGGTGTCACTCacgcatgtgatatttgtagaaagaaattttcaagcaagagtaatctcaaaatccacatcgatactgtgcacaatggtgtcactcactcatgtgatatttgcgaaAAGACGTTTTCCAAAAAAGGTAATCTCCAAAGTCACGTAGACATGGTGCATAAAGGTGTCActcatgcatgtgatatttgcggcaAGACATTCAAACGAAAAGATTAtcttaaaaaacataaacataAGATGCACGATGAATTCACCCACTGA
- Protein Sequence
- MESNHMFNSDIRVKEEPSDVPSVENNCEAIDEKPDLKNVQLSLFPRENSTYTPQKCEENHESELDDEVEIVVECEDVKPNINSLAVKKIDCSQNLLRNMKNRCGRKTENVIKVETTGEVKQEFSSDISEESNFNLDCELVERNTRRKIEKKYNNEHNLKTHIDTDNVTAHPCKICEKTYKRKSYLNSHIQSAHQGITYSCDICRKKFSQTGTLKVHIDSVHTRVTYSCDICGNSFTQKSSIKTHIDAMHNGVTCSCDICGKKYSNKGSLKTHIDSVHNGVTHACNTCGKSFTQKSNLKTHIDTVHNGVKYACHICGKKISTKSNLKTHIESVHNGVKQICITRRKSFTQKTNLQSHIDMVHKGVTHACDICRKKFSSKSNLKIHIDTVHNGVTHTCNTCGKSFTQKSSLKTHIDMVHKGVTHACDICRKKFSSKSNLKIHIDTVHNGVTHSCDICEKTFSKKGNLQSHVDMVHKGVTHACDICGKTFKRKDYLKKHKHKMHDEFTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482840;
- 90% Identity
- iTF_01482840;
- 80% Identity
- iTF_01482840;