Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000002.1:7815643-7817377[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.5e-05 0.00093 20.3 1.5 1 23 155 178 155 178 0.97

2 13 1.1e-05 0.0004 21.4 2.5 1 23 184 207 184 207 0.98

3 13 3e-06 0.00011 23.2 1.4 1 23 213 236 213 236 0.93

4 13 8.8e-06 0.00032 21.7 2.3 1 23 242 265 242 265 0.97

5 13 0.00022 0.008 17.4 5.5 1 23 271 294 271 294 0.97

6 13 2e-06 7.4e-05 23.7 0.8 1 23 300 323 300 323 0.96

7 13 0.002 0.072 14.3 0.4 1 23 329 352 329 352 0.91

8 13 1.5e-06 5.6e-05 24.1 1.3 1 23 358 381 358 381 0.98

9 13 2e-06 7.3e-05 23.8 1.5 1 23 387 410 387 410 0.97

10 13 2.4e-06 8.8e-05 23.5 0.4 1 23 416 439 416 439 0.97

11 13 2.5e-05 0.00091 20.3 2.8 1 23 445 468 445 468 0.97

12 13 1e-06 3.7e-05 24.7 0.8 1 23 474 497 474 497 0.97

13 13 2.2e-05 0.0008 20.5 1.2 1 23 503 526 503 526 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.5e-05	0.00093	20.3	1.5	1	23	155	178	155	178	0.97
2	13	1.1e-05	0.0004	21.4	2.5	1	23	184	207	184	207	0.98
3	13	3e-06	0.00011	23.2	1.4	1	23	213	236	213	236	0.93
4	13	8.8e-06	0.00032	21.7	2.3	1	23	242	265	242	265	0.97
5	13	0.00022	0.008	17.4	5.5	1	23	271	294	271	294	0.97
6	13	2e-06	7.4e-05	23.7	0.8	1	23	300	323	300	323	0.96
7	13	0.002	0.072	14.3	0.4	1	23	329	352	329	352	0.91
8	13	1.5e-06	5.6e-05	24.1	1.3	1	23	358	381	358	381	0.98
9	13	2e-06	7.3e-05	23.8	1.5	1	23	387	410	387	410	0.97
10	13	2.4e-06	8.8e-05	23.5	0.4	1	23	416	439	416	439	0.97
11	13	2.5e-05	0.00091	20.3	2.8	1	23	445	468	445	468	0.97
12	13	1e-06	3.7e-05	24.7	0.8	1	23	474	497	474	497	0.97
13	13	2.2e-05	0.0008	20.5	1.2	1	23	503	526	503	526	0.95

Sequence Information

Coding Sequence: atgaaaaacaaagcaaaTACAGTTAGGGTAAAGAAAGAGCCGAGCGATACTTGGCCAGATGCAGACGATTATAATTTCGATTCGGTGGACAATTGTGAGGTCAAAAATGTTAAGACATTAACGTTTTATAAATCATCGgtAAATCATATGGATAAAGATATTGTTCAAGATGAAAAggtagatgaaaaaatattcatagatTTAGAGTGCAAAGATTTTAAACACGAATTAAAATCAGCATTAAGATCCAACTGCAAAACTGAGAATCCAAGTTGCCTATCTattgtgaaaatagaaaaacaaattcaaactaataatttgaatgataaaaatctgataattttgataaaaaaacaattcgattatgataataattgcCAGTTTGAAATTAATTCCCGATTGGAATTTGAAAATCATAAGggcaagaaaatatttataaaaacatctCAAACCAAATTATCTCATGAGTGTGAAGTGTGTCGGAAAACTTACAAAGGGAAAGTAAATCTACGAAGACATATCATTACGATGCATACAATTTTTAGACCATATGAATGTGAGGTTTGCCACAAGTCATTTGGCCGCTATTATACGTTGAAAACTCACATAAACCGAGTACATAATCATAGCAAACCCTAcgagtgtgagatttgtcacaaatcctTTTCATTTAAGGGTGATCTCAAACGTCACGTAAGTGAAGTACATGTTCGGATCAAtccctttgaatgtgatatttgtcacaaatcatttgccCGCAATACTCATATCAAAGCTCATAtaaattcagtacataatcagagcaaacccttcgagtgtgaaatttgtcacaaatcatttggagtaAAACATtacctcaaaactcacatacaTACAATACACAATCTGagtaaacccttcgaatgtgaaatttgtcataaatcatttggacaaaaagtcaGCCTCACACGTCACATAAGTATagtacataatcgtagcaaactcttcgaatgtgatatttgtaaaaagtCATATGGACGTAAGGATACCCtcaaatttcacataattGCAGTACATAACcgaagcaaaccctttgaatgtgatatttgtcgcaaatcatttggacaaaaaggtcACCTCAATTCTCACATAAGATCAGTACACGATCGAAGCAAatccttcgaatgtgatatttgtcataaatcatttggacgaaaGGCTaccctcaaaactcacatcaaTTCTGTAcataatcgtagcaaacccttcgaatgtgaaatttgtcaaaagTCATATAGTCGCAAGGATTACCTCAAAATTCATGTAAATGTTGTACATGATCGGaacaaaccctttgaatgtgagatttgtcataaatcatttggatacaataTTCACCTTaaaactcacataaattcagtacatgatcggagcaaactcttcgaatgtgaaatttgtcaaaagTCATATAGTCGCAAGGATtacctcaaaactcacatagATACAGTACATGCTCGTATAAAACGTttcgagtgtgatatttgtcacaaatcattcggACAAAAAGGTACTTTCAAATCTCACATAAATGCAATTCACAATCAAAGGAAACACTAA
Protein Sequence: MKNKANTVRVKKEPSDTWPDADDYNFDSVDNCEVKNVKTLTFYKSSVNHMDKDIVQDEKVDEKIFIDLECKDFKHELKSALRSNCKTENPSCLSIVKIEKQIQTNNLNDKNLIILIKKQFDYDNNCQFEINSRLEFENHKGKKIFIKTSQTKLSHECEVCRKTYKGKVNLRRHIITMHTIFRPYECEVCHKSFGRYYTLKTHINRVHNHSKPYECEICHKSFSFKGDLKRHVSEVHVRINPFECDICHKSFARNTHIKAHINSVHNQSKPFECEICHKSFGVKHYLKTHIHTIHNLSKPFECEICHKSFGQKVSLTRHISIVHNRSKLFECDICKKSYGRKDTLKFHIIAVHNRSKPFECDICRKSFGQKGHLNSHIRSVHDRSKSFECDICHKSFGRKATLKTHINSVHNRSKPFECEICQKSYSRKDYLKIHVNVVHDRNKPFECEICHKSFGYNIHLKTHINSVHDRSKLFECEICQKSYSRKDYLKTHIDTVHARIKRFECDICHKSFGQKGTFKSHINAIHNQRKH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01482767;
90% Identity: iTF_01482767;
80% Identity: iTF_01482767;