Tden001567.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000002.1:7815605-7817377[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0001 0.02 15.7 2.7 7 43 145 178 140 179 0.89 2 10 0.19 38 5.2 2.0 18 44 185 208 184 208 0.91 3 10 0.18 35 5.3 1.0 18 43 214 236 209 237 0.76 4 10 0.013 2.5 8.9 4.0 4 44 229 266 227 266 0.85 5 10 4 7.9e+02 1.0 6.2 10 34 264 295 258 298 0.68 6 10 5.9 1.2e+03 0.4 4.9 15 39 298 319 286 324 0.70 7 10 0.049 9.6 7.1 2.2 5 43 317 352 314 353 0.84 8 10 1.3 2.6e+02 2.5 2.5 9 43 350 381 344 382 0.76 9 10 0.0026 0.5 11.2 4.1 6 44 376 411 373 411 0.90 10 10 0.024 4.7 8.1 0.1 17 32 416 436 412 440 0.78
Sequence Information
- Coding Sequence
- atgaaaaacaaagcaaaTACAGTTAGGGTAAAGAAAGAGCCGAGCGATACTTGGCCAGATGCAGACGATTATAATTTCGATTCGGTGGACAATTGTGAGGTCAAAAATGTTAAGACATTAACGTTTTATAAATCATCGgtAAATCATATGGATAAAGATATTGTTCAAGATGAAAAggtagatgaaaaaatattcatagatTTAGAGTGCAAAGATTTTAAACACGAATTAAAATCAGCATTAAGATCCAACTGCAAAACTGAGAATCCAAGTTGCCTATCTattgtgaaaatagaaaaacaaattcaaactaataatttgaatgataaaaatctgataattttgataaaaaaacaattcgattatgataataattgcCAGTTTGAAATTAATTCCCGATTGGAATTTGAAAATCATAAGggcaagaaaatatttataaaaacatctCAAACCAAATTATCTCATGAGTGTGAAGTGTGTCGGAAAACTTACAAAGGGAAAGTAAATCTACGAAGACATATCATTACGATGCATACAATTTTTAGACCATATGAATGTGAGGTTTGCCACAAGTCATTTGGCCGCTATTATACGTTGAAAACTCACATAAACCGAGTACATAATCATAGCAAACCCTAcgagtgtgagatttgtcacaaatcctTTTCATTTAAGGGTGATCTCAAACGTCACGTAAGTGAAGTACATGTTCGGATCAAtccctttgaatgtgatatttgtcacaaatcatttgccCGCAATACTCATATCAAAGCTCATAtaaattcagtacataatcagagcaaacccttcgagtgtgaaatttgtcacaaatcatttggagtaAAACATtacctcaaaactcacatacaTACAATACACAATCTGagtaaacccttcgaatgtgaaatttgtcataaatcatttggacaaaaagtcaGCCTCACACGTCACATAAGTATagtacataatcgtagcaaactcttcgaatgtgatatttgtaaaaagtCATATGGACGTAAGGATACCCtcaaatttcacataattGCAGTACATAACcgaagcaaaccctttgaatgtgatatttgtcgcaaatcatttggacaaaaaggtcACCTCAATTCTCACATAAGATCAGTACACGATCGAAGCAAatccttcgaatgtgatatttgtcataaatcatttggacgaaaGGCTaccctcaaaactcacatcaaTTCTGTAcataatcgtagcaaacccttcgaatgtgaaatttgtcaaaagTCATATAGTCGCAAGGATTACCTCAAAATTCATGAAACACTAAGAGCTTGGGTTTCGTCCAGAACCATTTGGTCTCAATGA
- Protein Sequence
- MKNKANTVRVKKEPSDTWPDADDYNFDSVDNCEVKNVKTLTFYKSSVNHMDKDIVQDEKVDEKIFIDLECKDFKHELKSALRSNCKTENPSCLSIVKIEKQIQTNNLNDKNLIILIKKQFDYDNNCQFEINSRLEFENHKGKKIFIKTSQTKLSHECEVCRKTYKGKVNLRRHIITMHTIFRPYECEVCHKSFGRYYTLKTHINRVHNHSKPYECEICHKSFSFKGDLKRHVSEVHVRINPFECDICHKSFARNTHIKAHINSVHNQSKPFECEICHKSFGVKHYLKTHIHTIHNLSKPFECEICHKSFGQKVSLTRHISIVHNRSKLFECDICKKSYGRKDTLKFHIIAVHNRSKPFECDICRKSFGQKGHLNSHIRSVHDRSKSFECDICHKSFGRKATLKTHINSVHNRSKPFECEICQKSYSRKDYLKIHETLRAWVSSRTIWSQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482831;
- 90% Identity
- iTF_01482831;
- 80% Identity
- iTF_01482831;