Tden009704.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000031.1:595974-597736[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.1e-05 0.0011 20.0 0.6 2 23 172 194 172 194 0.95 2 13 2.3e-05 0.00084 20.4 3.0 1 23 199 222 199 222 0.94 3 13 4.9e-06 0.00018 22.5 0.9 1 23 227 250 227 251 0.96 4 13 1.5e-05 0.00055 21.0 1.1 1 23 255 278 255 278 0.92 5 13 9.2e-05 0.0034 18.5 3.7 1 23 283 306 283 306 0.94 6 13 0.00011 0.0042 18.2 0.1 3 23 313 334 311 334 0.94 7 13 2.9e-06 0.00011 23.3 1.1 1 23 339 362 339 362 0.94 8 13 6.5e-06 0.00024 22.2 1.3 1 23 367 390 367 390 0.95 9 13 6.5e-06 0.00024 22.2 1.1 1 23 395 418 395 418 0.95 10 13 2.1e-05 0.00078 20.5 1.5 1 23 423 446 423 446 0.95 11 13 1.4e-06 5e-05 24.3 1.6 1 23 451 474 451 474 0.94 12 13 2.9e-06 0.00011 23.3 0.2 1 23 479 502 479 502 0.97 13 13 2.1e-06 7.6e-05 23.7 1.6 3 23 509 530 507 530 0.91
Sequence Information
- Coding Sequence
- ATGGACTGCAGTGGTCCGTGTAACTGTACTATCAGAGTGAAAGAGGAACCTAGTAATGTTTTGCCGAATGAAAATGATGGGGAAAAGATTGACGAGAAACCCGATCTCAAGAACTTCCAACTCTTACCACATTTGCCAGAAAATTCGACCGATAAACTCcgtaaatttgataaaaatcatgATAGTGAATTTGATGACGAAGTAAAAATAGTCGTTGAATGCCAAGACGTCAAACCCAACATTAATACACTAAaggttgaaaaaattgaagatgatTCTCAAAATTACTTGCGAGATATCGAATATAATGATGgttgtaaaaatcaaaataaaattaaaatagaaccAGTGGCAGTAAAACAAGAAATTGTGGATGACGCCGCAGAAGAATCGAATTTCAATTTCGACCCTATACTTGTCGAACAGATAGAACAAGgaagaattacaaaaaaaatcaacaaagatcgtaacctcaaaacacacACCGATTCGGTTGGTAGTGATACCCCGCCTACTTGTGATATATGCGGAAAGAAAAGCTCAACTGTgagtaatctcaaaaaacacatcgattcgatGCACAATGGTATCAAACATAATTGTAATGTATGCGGcaagaaattttcacaaaagggTCATGTCAACAAACACATCGATTCAGTACACAATAGAGTCACatatgcatgtgatatttgcggaaagaaatacTCTGAGAAGGGTAATCTCAATAAACACGTAAACTCTCTACACCACGGTATCActcatgcatgtgatatttgcggaaataAATTTACAGATAAGAGTAGTCTCAAAAAGCACATTGAGGCGAAGCACAATGATGTCACCCATACTTGCGATACTTGCCAAAAGAAATTCACAAGCAAGAGTTATCTGAAAGTACACACCGATTCAGTGCACAACGGTGTCACAATCGCATGTGAtgtttgcggaaagaaatacTCTCAAACCGGTAGTCTCAAAAAACACGTCGCGtcggtgcataatggtatcaaaCATGCATGTGACttatgcggaaagaaattctcaGACAAAGGTAGTcttaaaaaacacatcgattcgCTACATAACGGTGTGTCCCacgcatgtgatatttgcggaaagaaaaGCTCAACTAAGaataatctcaaaaaacacatcgatacCGCGCACAATGGTGTTAGAtacgcatgtgatatttgcggaaagaaattctcgGGGAAGTGTAGTCTTAAAAGACACATCGACTCGGCGCACAATGGTGTTTCACATGTATGTAATATATGCGGAAATAAATTCTCAGAGAAAAGTAGTcttaaaaaacacatcgattccATGCATAATGGTAGCACACATGCATGTAATGAGTGTGGAAAGTCATTCTCACAACGATATTATCTCAAAACCCACATTGATTcagtgcacaatggtgtcacatATGCATGTGATACTTGTGGAAAGTCGTTTAGCCTTCAAAGTgctctcaaaatccacatcgatacGAAACATAAAGGTGTGACCCACGCATGCATTACTTGTGGAAAAACATTCGCAAATAAGAGTAATCTACAAAAACACATCAAGACGATACATTATGGTATTATGGATGTGATAATTGTGTAA
- Protein Sequence
- MDCSGPCNCTIRVKEEPSNVLPNENDGEKIDEKPDLKNFQLLPHLPENSTDKLRKFDKNHDSEFDDEVKIVVECQDVKPNINTLKVEKIEDDSQNYLRDIEYNDGCKNQNKIKIEPVAVKQEIVDDAAEESNFNFDPILVEQIEQGRITKKINKDRNLKTHTDSVGSDTPPTCDICGKKSSTVSNLKKHIDSMHNGIKHNCNVCGKKFSQKGHVNKHIDSVHNRVTYACDICGKKYSEKGNLNKHVNSLHHGITHACDICGNKFTDKSSLKKHIEAKHNDVTHTCDTCQKKFTSKSYLKVHTDSVHNGVTIACDVCGKKYSQTGSLKKHVASVHNGIKHACDLCGKKFSDKGSLKKHIDSLHNGVSHACDICGKKSSTKNNLKKHIDTAHNGVRYACDICGKKFSGKCSLKRHIDSAHNGVSHVCNICGNKFSEKSSLKKHIDSMHNGSTHACNECGKSFSQRYYLKTHIDSVHNGVTYACDTCGKSFSLQSALKIHIDTKHKGVTHACITCGKTFANKSNLQKHIKTIHYGIMDVIIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482676;
- 90% Identity
- iTF_01482676;
- 80% Identity
- iTF_01482676;